Hb_001975_020

Information

Type -
Description -
Location Contig1975: 21860-33976
Sequence    

Annotation

kegg
ID rcu:RCOM_0784680
description hypothetical protein
nr
ID XP_012075996.1
description PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KHP1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11088 PE=4 SV=1
Gene Ontology
ID GO:0003746
description ubiquitin-associated domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19809: 33595-35164 , PASA_asmbl_19810: 21853-25678 , PASA_asmbl_19811: 21853-34615 , PASA_asmbl_19812: 21853-35164 , PASA_asmbl_19813: 22442-22936 , PASA_asmbl_19814: 21923-22186 , PASA_asmbl_19815: 21853-34615 , PASA_asmbl_19817: 32043-32276
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001975_020 0.0 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
2 Hb_000327_310 0.0525302838 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
3 Hb_046615_020 0.0536882451 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
4 Hb_031754_010 0.0560977528 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
5 Hb_005295_040 0.0696646176 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
6 Hb_000116_280 0.0702939708 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
7 Hb_003018_160 0.0721703736 - - PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]
8 Hb_003656_160 0.0737349522 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
9 Hb_004724_360 0.0742067351 - - OTU-like cysteine protease family protein [Populus trichocarpa]
10 Hb_000003_790 0.0747272407 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
11 Hb_001366_040 0.0756628552 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
12 Hb_000367_290 0.0759002877 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
13 Hb_025477_060 0.0764729581 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
14 Hb_175338_020 0.0765580769 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
15 Hb_004128_080 0.0766403016 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
16 Hb_001226_180 0.0780058744 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
17 Hb_002883_010 0.0785490749 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
18 Hb_002133_030 0.0787149082 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
19 Hb_004096_020 0.079178309 - - PREDICTED: KH domain-containing protein At4g18375-like, partial [Fragaria vesca subsp. vesca]
20 Hb_000230_370 0.0791944203 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001975_020 Hb_001975_020 Hb_000327_310 Hb_000327_310 Hb_001975_020--Hb_000327_310 Hb_046615_020 Hb_046615_020 Hb_001975_020--Hb_046615_020 Hb_031754_010 Hb_031754_010 Hb_001975_020--Hb_031754_010 Hb_005295_040 Hb_005295_040 Hb_001975_020--Hb_005295_040 Hb_000116_280 Hb_000116_280 Hb_001975_020--Hb_000116_280 Hb_003018_160 Hb_003018_160 Hb_001975_020--Hb_003018_160 Hb_004724_360 Hb_004724_360 Hb_000327_310--Hb_004724_360 Hb_073171_080 Hb_073171_080 Hb_000327_310--Hb_073171_080 Hb_000230_370 Hb_000230_370 Hb_000327_310--Hb_000230_370 Hb_000327_310--Hb_046615_020 Hb_001366_040 Hb_001366_040 Hb_000327_310--Hb_001366_040 Hb_002043_170 Hb_002043_170 Hb_046615_020--Hb_002043_170 Hb_046615_020--Hb_000230_370 Hb_046615_020--Hb_031754_010 Hb_004096_020 Hb_004096_020 Hb_046615_020--Hb_004096_020 Hb_000531_090 Hb_000531_090 Hb_046615_020--Hb_000531_090 Hb_000335_010 Hb_000335_010 Hb_031754_010--Hb_000335_010 Hb_000035_040 Hb_000035_040 Hb_031754_010--Hb_000035_040 Hb_002883_010 Hb_002883_010 Hb_031754_010--Hb_002883_010 Hb_000424_010 Hb_000424_010 Hb_031754_010--Hb_000424_010 Hb_005295_040--Hb_004724_360 Hb_002725_070 Hb_002725_070 Hb_005295_040--Hb_002725_070 Hb_000367_290 Hb_000367_290 Hb_005295_040--Hb_000367_290 Hb_005635_010 Hb_005635_010 Hb_005295_040--Hb_005635_010 Hb_005295_040--Hb_000327_310 Hb_005399_020 Hb_005399_020 Hb_000116_280--Hb_005399_020 Hb_000116_280--Hb_003018_160 Hb_000116_280--Hb_000367_290 Hb_006816_300 Hb_006816_300 Hb_000116_280--Hb_006816_300 Hb_002105_080 Hb_002105_080 Hb_000116_280--Hb_002105_080 Hb_011497_010 Hb_011497_010 Hb_003018_160--Hb_011497_010 Hb_001575_080 Hb_001575_080 Hb_003018_160--Hb_001575_080 Hb_003018_160--Hb_006816_300 Hb_002493_090 Hb_002493_090 Hb_003018_160--Hb_002493_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.7338 26.5942 10.1769 10.5262 58.5023 54.6491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0861 10.4626 24.3594 15.3031 11.5505

CAGE analysis