Hb_001975_030

Information

Type -
Description -
Location Contig1975: 36171-37221
Sequence    

Annotation

kegg
ID -
description -
nr
ID AHG98062.1
description 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase, partial [Plectranthus barbatus]
swissprot
ID -
description -
trembl
ID A0A0E0E3X9
description Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1
Gene Ontology
ID GO:0009570
description 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19818: 36290-44216
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001975_030 0.0 - - 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase, partial [Plectranthus barbatus]
2 Hb_001817_100 0.1152361465 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
3 Hb_007590_090 0.1165254995 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
4 Hb_000012_110 0.1198176311 - - hypothetical protein CICLE_v10008613mg [Citrus clementina]
5 Hb_002615_030 0.1214953605 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
6 Hb_001998_200 0.1319334385 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
7 Hb_000110_060 0.1414745574 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
8 Hb_001277_050 0.1437912931 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
9 Hb_003602_060 0.1445616326 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
10 Hb_027654_080 0.1458162119 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1 [Jatropha curcas]
11 Hb_002217_100 0.1468110266 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
12 Hb_000599_210 0.147272758 - - serine/threonine-protein kinase, putative [Ricinus communis]
13 Hb_003371_070 0.1487327809 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
14 Hb_001975_040 0.1508509971 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
15 Hb_006836_030 0.1511634328 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
16 Hb_005218_080 0.1541091928 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_012851_020 0.1552135443 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_001329_070 0.1553944008 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
19 Hb_002016_140 0.1554389574 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
20 Hb_005016_010 0.1563918622 - - AMP dependent CoA ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001975_030 Hb_001975_030 Hb_001817_100 Hb_001817_100 Hb_001975_030--Hb_001817_100 Hb_007590_090 Hb_007590_090 Hb_001975_030--Hb_007590_090 Hb_000012_110 Hb_000012_110 Hb_001975_030--Hb_000012_110 Hb_002615_030 Hb_002615_030 Hb_001975_030--Hb_002615_030 Hb_001998_200 Hb_001998_200 Hb_001975_030--Hb_001998_200 Hb_000110_060 Hb_000110_060 Hb_001975_030--Hb_000110_060 Hb_001817_100--Hb_007590_090 Hb_002217_100 Hb_002217_100 Hb_001817_100--Hb_002217_100 Hb_001817_100--Hb_002615_030 Hb_000023_310 Hb_000023_310 Hb_001817_100--Hb_000023_310 Hb_002007_320 Hb_002007_320 Hb_001817_100--Hb_002007_320 Hb_001817_100--Hb_001998_200 Hb_007590_090--Hb_002615_030 Hb_004007_110 Hb_004007_110 Hb_007590_090--Hb_004007_110 Hb_007590_090--Hb_001998_200 Hb_007590_090--Hb_000012_110 Hb_007590_090--Hb_002217_100 Hb_000012_110--Hb_004007_110 Hb_000012_110--Hb_001998_200 Hb_000012_110--Hb_002615_030 Hb_003602_060 Hb_003602_060 Hb_000012_110--Hb_003602_060 Hb_015057_020 Hb_015057_020 Hb_000012_110--Hb_015057_020 Hb_002615_030--Hb_000023_310 Hb_005016_010 Hb_005016_010 Hb_002615_030--Hb_005016_010 Hb_000599_210 Hb_000599_210 Hb_002615_030--Hb_000599_210 Hb_002615_030--Hb_000110_060 Hb_000365_010 Hb_000365_010 Hb_002615_030--Hb_000365_010 Hb_001998_200--Hb_004007_110 Hb_001998_200--Hb_002615_030 Hb_001998_200--Hb_003602_060 Hb_003371_070 Hb_003371_070 Hb_000110_060--Hb_003371_070 Hb_000849_120 Hb_000849_120 Hb_000110_060--Hb_000849_120 Hb_001619_060 Hb_001619_060 Hb_000110_060--Hb_001619_060 Hb_000181_460 Hb_000181_460 Hb_000110_060--Hb_000181_460 Hb_021943_090 Hb_021943_090 Hb_000110_060--Hb_021943_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.229713 3.32474 5.70348 6.81009 0.0774382 0.416845
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.99077 5.40171 3.23392 4.76832 7.1121

CAGE analysis