Hb_001975_050

Information

Type -
Description -
Location Contig1975: 45629-59783
Sequence    

Annotation

kegg
ID rcu:RCOM_0784660
description Tyrosine-specific transport protein, putative
nr
ID XP_002523215.1
description Tyrosine-specific transport protein, putative [Ricinus communis]
swissprot
ID P0AAD5
description Tyrosine-specific transport protein OS=Shigella flexneri GN=tyrP PE=3 SV=1
trembl
ID B9SB46
description Tyrosine-specific transport protein, putative OS=Ricinus communis GN=RCOM_0784660 PE=4 SV=1
Gene Ontology
ID GO:0009706
description tyrosine-specific transport

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19820: 51212-51357 , PASA_asmbl_19821: 45784-59674
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001975_050 0.0 - - Tyrosine-specific transport protein, putative [Ricinus communis]
2 Hb_188739_010 0.1062456327 - - protein binding protein, putative [Ricinus communis]
3 Hb_000637_070 0.1103918569 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
4 Hb_002435_090 0.1118001136 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
5 Hb_001343_120 0.1138115985 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003992_050 0.1222639153 - - delta 9 desaturase, putative [Ricinus communis]
7 Hb_027654_070 0.1294231763 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000934_260 0.1308566392 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
9 Hb_000207_140 0.1310716748 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
10 Hb_002400_010 0.1356079419 - - PREDICTED: putative L-ascorbate peroxidase 6 [Jatropha curcas]
11 Hb_000816_210 0.1367814122 - - PREDICTED: uroporphyrinogen decarboxylase isoform X2 [Jatropha curcas]
12 Hb_000169_070 0.1370068712 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
13 Hb_000300_710 0.1386639668 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
14 Hb_000076_090 0.1451399196 - - protein with unknown function [Ricinus communis]
15 Hb_006252_030 0.1497436295 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
16 Hb_000042_390 0.1502263672 - - PREDICTED: cyclin-dependent kinase inhibitor 7 [Jatropha curcas]
17 Hb_002498_170 0.1506443574 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
18 Hb_003470_100 0.1510663137 - - protein binding protein, putative [Ricinus communis]
19 Hb_004208_090 0.1518847996 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
20 Hb_002999_030 0.1530284238 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]

Gene co-expression network

sample Hb_001975_050 Hb_001975_050 Hb_188739_010 Hb_188739_010 Hb_001975_050--Hb_188739_010 Hb_000637_070 Hb_000637_070 Hb_001975_050--Hb_000637_070 Hb_002435_090 Hb_002435_090 Hb_001975_050--Hb_002435_090 Hb_001343_120 Hb_001343_120 Hb_001975_050--Hb_001343_120 Hb_003992_050 Hb_003992_050 Hb_001975_050--Hb_003992_050 Hb_027654_070 Hb_027654_070 Hb_001975_050--Hb_027654_070 Hb_188739_010--Hb_002435_090 Hb_000207_140 Hb_000207_140 Hb_188739_010--Hb_000207_140 Hb_000347_140 Hb_000347_140 Hb_188739_010--Hb_000347_140 Hb_000300_710 Hb_000300_710 Hb_188739_010--Hb_000300_710 Hb_188739_010--Hb_001343_120 Hb_000934_260 Hb_000934_260 Hb_000637_070--Hb_000934_260 Hb_001999_260 Hb_001999_260 Hb_000637_070--Hb_001999_260 Hb_004208_090 Hb_004208_090 Hb_000637_070--Hb_004208_090 Hb_050514_020 Hb_050514_020 Hb_000637_070--Hb_050514_020 Hb_003470_100 Hb_003470_100 Hb_000637_070--Hb_003470_100 Hb_002435_090--Hb_000207_140 Hb_002435_090--Hb_001343_120 Hb_002435_090--Hb_003992_050 Hb_140360_010 Hb_140360_010 Hb_002435_090--Hb_140360_010 Hb_000042_390 Hb_000042_390 Hb_001343_120--Hb_000042_390 Hb_001343_120--Hb_000207_140 Hb_004218_050 Hb_004218_050 Hb_001343_120--Hb_004218_050 Hb_002540_060 Hb_002540_060 Hb_001343_120--Hb_002540_060 Hb_003992_050--Hb_000207_140 Hb_003992_050--Hb_140360_010 Hb_003992_050--Hb_188739_010 Hb_001386_090 Hb_001386_090 Hb_003992_050--Hb_001386_090 Hb_027654_070--Hb_003992_050 Hb_027654_070--Hb_001343_120 Hb_027654_070--Hb_000207_140 Hb_027654_070--Hb_002540_060 Hb_027654_070--Hb_002435_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.41278 9.12886 65.7688 10.7819 5.33207 6.90791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.39542 1.6671 1.40798 1.83201 24.5802

CAGE analysis