Hb_001975_070

Information

Type -
Description -
Location Contig1975: 68033-69967
Sequence    

Annotation

kegg
ID pvu:PHAVU_006G019800g
description hypothetical protein
nr
ID ADR70877.1
description eukaryotic translation elongation factor 1B alpha-subunit [Hevea brasiliensis]
swissprot
ID Q84WM9
description Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2
trembl
ID V5IV08
description Eukaryotic translation elongation factor 1B alpha-subunit OS=Hevea brasiliensis GN=EF1Balpha1 PE=2 SV=1
Gene Ontology
ID GO:0005853
description elongation factor 1-beta 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19822: 68223-70108 , PASA_asmbl_19823: 68230-69982
cDNA
(Sanger)
(ID:Location)		 001_H11.ab1: 68230-69859 , 003_E22.ab1: 68230-69878 , 007_N24.ab1: 68221-69860 , 008_F01.ab1: 68232-69530 , 009_B23.ab1: 68230-69790 , 012_E09.ab1: 68230-69884 , 014_I16.ab1: 68230-69769 , 021_H05.ab1: 68230-69712 , 024_N20.ab1: 68221-69797 , 031_D13.ab1: 68237-69886 , 035_J04.ab1: 68230-69799 , 037_O11.ab1: 68230-69860 , 042_M03.ab1: 68221-69801 , 053_E17.ab1: 68221-69788

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001975_070 0.0 - - eukaryotic translation elongation factor 1B alpha-subunit [Hevea brasiliensis]
2 Hb_005147_110 0.0758153991 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
3 Hb_001009_050 0.076592703 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
4 Hb_000029_160 0.0807161032 - - Nitrilase, putative [Ricinus communis]
5 Hb_002960_060 0.0826847954 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 28 [Jatropha curcas]
6 Hb_001341_030 0.0834419405 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
7 Hb_000373_270 0.0910224934 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
8 Hb_000172_550 0.0935480485 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
9 Hb_005333_020 0.0950288315 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
10 Hb_018663_020 0.0968939018 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
11 Hb_008725_250 0.0970312927 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_004310_060 0.0972722239 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_000645_150 0.0976448556 - - zinc finger protein, putative [Ricinus communis]
14 Hb_000186_280 0.0986511578 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
15 Hb_002169_010 0.0999220567 - - PREDICTED: la-related protein 6B [Jatropha curcas]
16 Hb_001623_550 0.1010998585 - - PREDICTED: surfeit locus protein 6 [Jatropha curcas]
17 Hb_000300_280 0.1011165031 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
18 Hb_001195_100 0.1017515567 - - PREDICTED: uncharacterized protein LOC105633812 [Jatropha curcas]
19 Hb_000186_040 0.1079073308 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000270_450 0.1084185888 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]

Gene co-expression network

sample Hb_001975_070 Hb_001975_070 Hb_005147_110 Hb_005147_110 Hb_001975_070--Hb_005147_110 Hb_001009_050 Hb_001009_050 Hb_001975_070--Hb_001009_050 Hb_000029_160 Hb_000029_160 Hb_001975_070--Hb_000029_160 Hb_002960_060 Hb_002960_060 Hb_001975_070--Hb_002960_060 Hb_001341_030 Hb_001341_030 Hb_001975_070--Hb_001341_030 Hb_000373_270 Hb_000373_270 Hb_001975_070--Hb_000373_270 Hb_008725_250 Hb_008725_250 Hb_005147_110--Hb_008725_250 Hb_004310_060 Hb_004310_060 Hb_005147_110--Hb_004310_060 Hb_005147_110--Hb_001341_030 Hb_005914_230 Hb_005914_230 Hb_005147_110--Hb_005914_230 Hb_018663_020 Hb_018663_020 Hb_005147_110--Hb_018663_020 Hb_005147_110--Hb_000373_270 Hb_001009_050--Hb_018663_020 Hb_000270_450 Hb_000270_450 Hb_001009_050--Hb_000270_450 Hb_001623_550 Hb_001623_550 Hb_001009_050--Hb_001623_550 Hb_025048_040 Hb_025048_040 Hb_001009_050--Hb_025048_040 Hb_009615_110 Hb_009615_110 Hb_001009_050--Hb_009615_110 Hb_000029_160--Hb_002960_060 Hb_000172_550 Hb_000172_550 Hb_000029_160--Hb_000172_550 Hb_027405_020 Hb_027405_020 Hb_000029_160--Hb_027405_020 Hb_002078_420 Hb_002078_420 Hb_000029_160--Hb_002078_420 Hb_000310_080 Hb_000310_080 Hb_000029_160--Hb_000310_080 Hb_002960_060--Hb_005147_110 Hb_002169_010 Hb_002169_010 Hb_002960_060--Hb_002169_010 Hb_002960_060--Hb_004310_060 Hb_000808_180 Hb_000808_180 Hb_002960_060--Hb_000808_180 Hb_001341_030--Hb_000373_270 Hb_001341_030--Hb_004310_060 Hb_001341_030--Hb_018663_020 Hb_001969_040 Hb_001969_040 Hb_001341_030--Hb_001969_040 Hb_000300_280 Hb_000300_280 Hb_000373_270--Hb_000300_280 Hb_000373_270--Hb_004310_060 Hb_000186_280 Hb_000186_280 Hb_000373_270--Hb_000186_280 Hb_000879_140 Hb_000879_140 Hb_000373_270--Hb_000879_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2505.38 1124.43 230.333 277.451 1838.8 2066.94
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1380.65 1064.9 716.708 811.123 105.912

CAGE analysis