Hb_001975_090

Information

Type transcription factor
Description TF Family: MYB
Location Contig1975: 77083-82470
Sequence    

Annotation

kegg
ID pop:POPTR_0009s02380g
description POPTRDRAFT_768327; hypothetical protein
nr
ID XP_012075987.1
description PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
swissprot
ID Q0JIC2
description Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1
trembl
ID A0A067KE64
description MYB family protein OS=Jatropha curcas GN=JCGZ_11076 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor gamyb-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19824: 77029-77255 , PASA_asmbl_19825: 77309-77646 , PASA_asmbl_19827: 79444-81336 , PASA_asmbl_19829: 82320-82619
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001975_090 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
2 Hb_000205_190 0.0776609213 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
3 Hb_004970_190 0.0796951961 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_000804_040 0.0859615422 - - protein with unknown function [Ricinus communis]
5 Hb_001001_080 0.0861114191 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
6 Hb_001700_010 0.0869669419 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
7 Hb_000869_020 0.0900490897 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
8 Hb_003029_070 0.0923356006 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_075751_010 0.0927934048 - - PREDICTED: uncharacterized protein LOC105635783 isoform X2 [Jatropha curcas]
10 Hb_000136_110 0.0932119174 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
11 Hb_017151_010 0.0942515067 - - PREDICTED: uncharacterized protein LOC105641966 [Jatropha curcas]
12 Hb_004398_030 0.0970123687 - - PREDICTED: chloroplast processing peptidase [Jatropha curcas]
13 Hb_162286_010 0.0970333336 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
14 Hb_001789_190 0.0970877832 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
15 Hb_000866_010 0.0980738128 - - conserved hypothetical protein [Ricinus communis]
16 Hb_025557_050 0.0994922388 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
17 Hb_000753_240 0.1000357984 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
18 Hb_008165_060 0.1012709083 - - PREDICTED: uncharacterized protein LOC105635541 [Jatropha curcas]
19 Hb_001322_140 0.1024309519 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
20 Hb_006817_010 0.1028120262 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001975_090 Hb_001975_090 Hb_000205_190 Hb_000205_190 Hb_001975_090--Hb_000205_190 Hb_004970_190 Hb_004970_190 Hb_001975_090--Hb_004970_190 Hb_000804_040 Hb_000804_040 Hb_001975_090--Hb_000804_040 Hb_001001_080 Hb_001001_080 Hb_001975_090--Hb_001001_080 Hb_001700_010 Hb_001700_010 Hb_001975_090--Hb_001700_010 Hb_000869_020 Hb_000869_020 Hb_001975_090--Hb_000869_020 Hb_001158_070 Hb_001158_070 Hb_000205_190--Hb_001158_070 Hb_000205_190--Hb_004970_190 Hb_000205_190--Hb_000804_040 Hb_008165_060 Hb_008165_060 Hb_000205_190--Hb_008165_060 Hb_000205_190--Hb_001001_080 Hb_007007_120 Hb_007007_120 Hb_000205_190--Hb_007007_120 Hb_012395_230 Hb_012395_230 Hb_004970_190--Hb_012395_230 Hb_004970_190--Hb_007007_120 Hb_003513_010 Hb_003513_010 Hb_004970_190--Hb_003513_010 Hb_004970_190--Hb_000869_020 Hb_000753_240 Hb_000753_240 Hb_004970_190--Hb_000753_240 Hb_022693_140 Hb_022693_140 Hb_000804_040--Hb_022693_140 Hb_000804_040--Hb_004970_190 Hb_001322_140 Hb_001322_140 Hb_000804_040--Hb_001322_140 Hb_012022_150 Hb_012022_150 Hb_000804_040--Hb_012022_150 Hb_000804_040--Hb_000753_240 Hb_000599_180 Hb_000599_180 Hb_001001_080--Hb_000599_180 Hb_007657_010 Hb_007657_010 Hb_001001_080--Hb_007657_010 Hb_004097_070 Hb_004097_070 Hb_001001_080--Hb_004097_070 Hb_001789_190 Hb_001789_190 Hb_001001_080--Hb_001789_190 Hb_001001_080--Hb_004970_190 Hb_000103_480 Hb_000103_480 Hb_001700_010--Hb_000103_480 Hb_000184_170 Hb_000184_170 Hb_001700_010--Hb_000184_170 Hb_001700_010--Hb_000869_020 Hb_001700_010--Hb_008165_060 Hb_001700_010--Hb_001322_140 Hb_001700_010--Hb_000205_190 Hb_000869_020--Hb_003513_010 Hb_004052_080 Hb_004052_080 Hb_000869_020--Hb_004052_080 Hb_003861_060 Hb_003861_060 Hb_000869_020--Hb_003861_060 Hb_000869_020--Hb_007007_120 Hb_005588_080 Hb_005588_080 Hb_000869_020--Hb_005588_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.14035 2.16831 5.61547 2.56765 3.62887 3.45405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.82374 2.8484 4.06225 2.3963 5.20748

CAGE analysis