Hb_001975_100

Information

Type -
Description -
Location Contig1975: 85294-86886
Sequence    

Annotation

kegg
ID vvi:100254533
description chlorophyll a-b binding protein 151, chloroplastic-like
nr
ID NP_001295615.1
description chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
swissprot
ID P12062
description Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1
trembl
ID D0F1Q5
description Chlorophyll A/B binding protein OS=Jatropha curcas PE=2 SV=1
Gene Ontology
ID GO:0009522
description chlorophyll a-b binding protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19831: 85087-92194 , PASA_asmbl_19833: 85087-86897 , PASA_asmbl_19834: 85087-92013
cDNA
(Sanger)
(ID:Location)		 006_N16.ab1: 85593-86897 , 011_I10.ab1: 85527-92194 , 011_M13.ab1: 85514-92194 , 015_D04.ab1: 85701-86897 , 028_N20.ab1: 85639-86896 , 041_H14.ab1: 85619-86897 , 053_I11.ab1: 85491-92194

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001975_100 0.0 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
2 Hb_005063_030 0.0195210945 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
3 Hb_000254_130 0.0418622104 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
4 Hb_001006_040 0.0467242527 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
5 Hb_001292_030 0.0480890413 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
6 Hb_001564_120 0.0527872864 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
7 Hb_008225_050 0.0541453772 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
8 Hb_001999_230 0.0544478322 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
9 Hb_002752_020 0.055600721 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
10 Hb_001277_350 0.0598887776 - - early light-induced protein, putative [Ricinus communis]
11 Hb_000497_050 0.0604711024 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
12 Hb_001958_060 0.0635511813 - - PREDICTED: calcium uptake protein 1, mitochondrial-like [Jatropha curcas]
13 Hb_006570_030 0.0644474409 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
14 Hb_000077_380 0.0651476736 - - PREDICTED: protochlorophyllide reductase [Jatropha curcas]
15 Hb_002785_030 0.0658118448 - - Polyketide cyclase/dehydrase and lipid transport superfamily protein [Theobroma cacao]
16 Hb_003777_080 0.0660789016 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
17 Hb_000101_330 0.0673851345 - - -
18 Hb_003025_160 0.0680294892 - - Protein HVA22, putative [Ricinus communis]
19 Hb_001028_040 0.0699843759 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
20 Hb_001007_070 0.0707628132 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_001975_100 Hb_001975_100 Hb_005063_030 Hb_005063_030 Hb_001975_100--Hb_005063_030 Hb_000254_130 Hb_000254_130 Hb_001975_100--Hb_000254_130 Hb_001006_040 Hb_001006_040 Hb_001975_100--Hb_001006_040 Hb_001292_030 Hb_001292_030 Hb_001975_100--Hb_001292_030 Hb_001564_120 Hb_001564_120 Hb_001975_100--Hb_001564_120 Hb_008225_050 Hb_008225_050 Hb_001975_100--Hb_008225_050 Hb_005063_030--Hb_001564_120 Hb_005063_030--Hb_000254_130 Hb_000101_330 Hb_000101_330 Hb_005063_030--Hb_000101_330 Hb_005063_030--Hb_001292_030 Hb_001999_230 Hb_001999_230 Hb_005063_030--Hb_001999_230 Hb_000254_130--Hb_001999_230 Hb_000254_130--Hb_008225_050 Hb_003025_160 Hb_003025_160 Hb_000254_130--Hb_003025_160 Hb_002752_020 Hb_002752_020 Hb_000254_130--Hb_002752_020 Hb_002785_030 Hb_002785_030 Hb_001006_040--Hb_002785_030 Hb_001006_040--Hb_001292_030 Hb_001322_120 Hb_001322_120 Hb_001006_040--Hb_001322_120 Hb_001006_040--Hb_005063_030 Hb_001028_040 Hb_001028_040 Hb_001006_040--Hb_001028_040 Hb_001292_030--Hb_002785_030 Hb_001292_030--Hb_001322_120 Hb_000230_420 Hb_000230_420 Hb_001292_030--Hb_000230_420 Hb_006570_030 Hb_006570_030 Hb_001292_030--Hb_006570_030 Hb_000098_040 Hb_000098_040 Hb_001564_120--Hb_000098_040 Hb_001564_120--Hb_001999_230 Hb_000099_120 Hb_000099_120 Hb_001564_120--Hb_000099_120 Hb_001007_070 Hb_001007_070 Hb_001564_120--Hb_001007_070 Hb_007537_040 Hb_007537_040 Hb_008225_050--Hb_007537_040 Hb_008225_050--Hb_003025_160 Hb_008225_050--Hb_002752_020 Hb_004970_060 Hb_004970_060 Hb_008225_050--Hb_004970_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 28.8497 301.379 151.378 0 0.109428
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.370775 0.400995 0.0674034 4.40528 520.345

CAGE analysis