Hb_001975_140

Information

Type -
Description -
Location Contig1975: 130209-130967
Sequence    

Annotation

kegg
ID pop:POPTR_0001s23160g
description POPTRDRAFT_548690; urease accessory protein UreF
nr
ID XP_012075984.1
description PREDICTED: urease accessory protein F [Jatropha curcas]
swissprot
ID Q9XHZ3
description Urease accessory protein F OS=Arabidopsis thaliana GN=UREF PE=2 SV=1
trembl
ID A0A067KRR2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11069 PE=4 SV=1
Gene Ontology
ID GO:0016151
description urease accessory protein f

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19837: 129937-133377
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001975_140 0.0 - - PREDICTED: urease accessory protein F [Jatropha curcas]
2 Hb_005489_110 0.0889331842 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
3 Hb_132835_010 0.0894983082 - - PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
4 Hb_000173_290 0.0951631204 - - guanylate kinase, putative [Ricinus communis]
5 Hb_005194_010 0.0966452864 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
6 Hb_000342_130 0.100646173 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
7 Hb_009658_020 0.1018198481 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
8 Hb_001776_140 0.1026214878 - - PREDICTED: probable GTP-binding protein OBGM, mitochondrial isoform X2 [Jatropha curcas]
9 Hb_001828_190 0.1027640844 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
10 Hb_000206_210 0.1035319859 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
11 Hb_002477_070 0.103819128 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
12 Hb_000120_790 0.1065567186 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
13 Hb_001234_100 0.1068128066 - - PREDICTED: eyes absent homolog 2 isoform X1 [Jatropha curcas]
14 Hb_002200_080 0.1080612879 - - PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]
15 Hb_004182_040 0.1092674387 - - PREDICTED: J domain-containing protein spf31 [Jatropha curcas]
16 Hb_000243_030 0.1093525231 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
17 Hb_001019_190 0.1098863357 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008790_030 0.1106969702 - - PREDICTED: probable magnesium transporter NIPA9 [Jatropha curcas]
19 Hb_024714_100 0.1111250091 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 isoform X1 [Jatropha curcas]
20 Hb_000069_110 0.1121152265 - - PREDICTED: nephrocystin-3-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001975_140 Hb_001975_140 Hb_005489_110 Hb_005489_110 Hb_001975_140--Hb_005489_110 Hb_132835_010 Hb_132835_010 Hb_001975_140--Hb_132835_010 Hb_000173_290 Hb_000173_290 Hb_001975_140--Hb_000173_290 Hb_005194_010 Hb_005194_010 Hb_001975_140--Hb_005194_010 Hb_000342_130 Hb_000342_130 Hb_001975_140--Hb_000342_130 Hb_009658_020 Hb_009658_020 Hb_001975_140--Hb_009658_020 Hb_003195_070 Hb_003195_070 Hb_005489_110--Hb_003195_070 Hb_007426_030 Hb_007426_030 Hb_005489_110--Hb_007426_030 Hb_001623_510 Hb_001623_510 Hb_005489_110--Hb_001623_510 Hb_004109_090 Hb_004109_090 Hb_005489_110--Hb_004109_090 Hb_009048_040 Hb_009048_040 Hb_005489_110--Hb_009048_040 Hb_010655_010 Hb_010655_010 Hb_132835_010--Hb_010655_010 Hb_004440_090 Hb_004440_090 Hb_132835_010--Hb_004440_090 Hb_000069_110 Hb_000069_110 Hb_132835_010--Hb_000069_110 Hb_001703_030 Hb_001703_030 Hb_132835_010--Hb_001703_030 Hb_002609_020 Hb_002609_020 Hb_132835_010--Hb_002609_020 Hb_000120_790 Hb_000120_790 Hb_000173_290--Hb_000120_790 Hb_000054_090 Hb_000054_090 Hb_000173_290--Hb_000054_090 Hb_000206_210 Hb_000206_210 Hb_000173_290--Hb_000206_210 Hb_000173_290--Hb_000342_130 Hb_002200_080 Hb_002200_080 Hb_000173_290--Hb_002200_080 Hb_000777_040 Hb_000777_040 Hb_000173_290--Hb_000777_040 Hb_008648_010 Hb_008648_010 Hb_005194_010--Hb_008648_010 Hb_000521_050 Hb_000521_050 Hb_005194_010--Hb_000521_050 Hb_001828_060 Hb_001828_060 Hb_005194_010--Hb_001828_060 Hb_002477_070 Hb_002477_070 Hb_005194_010--Hb_002477_070 Hb_001828_190 Hb_001828_190 Hb_005194_010--Hb_001828_190 Hb_002226_070 Hb_002226_070 Hb_005194_010--Hb_002226_070 Hb_000342_130--Hb_000120_790 Hb_004841_010 Hb_004841_010 Hb_000342_130--Hb_004841_010 Hb_065500_060 Hb_065500_060 Hb_000342_130--Hb_065500_060 Hb_000883_020 Hb_000883_020 Hb_000342_130--Hb_000883_020 Hb_000331_260 Hb_000331_260 Hb_000342_130--Hb_000331_260 Hb_032258_030 Hb_032258_030 Hb_009658_020--Hb_032258_030 Hb_002893_080 Hb_002893_080 Hb_009658_020--Hb_002893_080 Hb_000103_080 Hb_000103_080 Hb_009658_020--Hb_000103_080 Hb_155159_030 Hb_155159_030 Hb_009658_020--Hb_155159_030 Hb_001579_220 Hb_001579_220 Hb_009658_020--Hb_001579_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.93945 2.23832 3.0875 6.80032 13.1742 9.98534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.48576 11.1017 9.83677 5.1255 7.8425

CAGE analysis