Hb_001975_150

Information

Type -
Description -
Location Contig1975: 136925-140767
Sequence    

Annotation

kegg
ID rcu:RCOM_1395040
description hypothetical protein
nr
ID XP_012075981.1
description PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
swissprot
ID Q8GXP1
description RINT1-like protein MAG2L OS=Arabidopsis thaliana GN=MAG2L PE=2 SV=1
trembl
ID B9T2W6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1395040 PE=4 SV=1
Gene Ontology
ID GO:0005783
description rint1-like protein mag2l

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19838: 137101-137321 , PASA_asmbl_19839: 138635-139590
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001975_150 0.0 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
2 Hb_011537_060 0.0619869139 - - UPF0061 protein azo1574 [Morus notabilis]
3 Hb_000504_180 0.0670548168 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
4 Hb_000185_220 0.0697724867 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
5 Hb_004218_180 0.0733291719 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
6 Hb_000635_060 0.0758880816 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
7 Hb_003517_070 0.0759258635 - - PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]
8 Hb_001478_010 0.0775861691 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Jatropha curcas]
9 Hb_001195_400 0.0783382015 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
10 Hb_000359_210 0.078708096 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003340_010 0.0810864426 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
12 Hb_000309_050 0.0811785174 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
13 Hb_003206_110 0.0814852307 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
14 Hb_000789_200 0.0815156035 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
15 Hb_006059_010 0.0821932485 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
16 Hb_002874_110 0.0827675136 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
17 Hb_011224_050 0.0833796997 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Populus euphratica]
18 Hb_001716_040 0.0841448391 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
19 Hb_000363_040 0.0844799986 - - Protein transport protein Sec24A, putative [Ricinus communis]
20 Hb_008948_020 0.0849906575 - - hypothetical protein JCGZ_21216 [Jatropha curcas]

Gene co-expression network

sample Hb_001975_150 Hb_001975_150 Hb_011537_060 Hb_011537_060 Hb_001975_150--Hb_011537_060 Hb_000504_180 Hb_000504_180 Hb_001975_150--Hb_000504_180 Hb_000185_220 Hb_000185_220 Hb_001975_150--Hb_000185_220 Hb_004218_180 Hb_004218_180 Hb_001975_150--Hb_004218_180 Hb_000635_060 Hb_000635_060 Hb_001975_150--Hb_000635_060 Hb_003517_070 Hb_003517_070 Hb_001975_150--Hb_003517_070 Hb_007933_040 Hb_007933_040 Hb_011537_060--Hb_007933_040 Hb_011537_060--Hb_004218_180 Hb_005489_040 Hb_005489_040 Hb_011537_060--Hb_005489_040 Hb_003340_010 Hb_003340_010 Hb_011537_060--Hb_003340_010 Hb_002874_110 Hb_002874_110 Hb_011537_060--Hb_002874_110 Hb_001716_040 Hb_001716_040 Hb_000504_180--Hb_001716_040 Hb_158530_020 Hb_158530_020 Hb_000504_180--Hb_158530_020 Hb_001951_220 Hb_001951_220 Hb_000504_180--Hb_001951_220 Hb_009296_080 Hb_009296_080 Hb_000504_180--Hb_009296_080 Hb_005582_040 Hb_005582_040 Hb_000504_180--Hb_005582_040 Hb_006059_010 Hb_006059_010 Hb_000185_220--Hb_006059_010 Hb_001195_400 Hb_001195_400 Hb_000185_220--Hb_001195_400 Hb_003206_110 Hb_003206_110 Hb_000185_220--Hb_003206_110 Hb_001080_300 Hb_001080_300 Hb_000185_220--Hb_001080_300 Hb_000309_050 Hb_000309_050 Hb_000185_220--Hb_000309_050 Hb_006100_020 Hb_006100_020 Hb_004218_180--Hb_006100_020 Hb_000270_170 Hb_000270_170 Hb_004218_180--Hb_000270_170 Hb_008948_020 Hb_008948_020 Hb_004218_180--Hb_008948_020 Hb_001141_240 Hb_001141_240 Hb_004218_180--Hb_001141_240 Hb_002539_070 Hb_002539_070 Hb_000635_060--Hb_002539_070 Hb_000635_060--Hb_001716_040 Hb_001478_010 Hb_001478_010 Hb_000635_060--Hb_001478_010 Hb_002686_090 Hb_002686_090 Hb_000635_060--Hb_002686_090 Hb_000482_040 Hb_000482_040 Hb_000635_060--Hb_000482_040 Hb_000635_060--Hb_000504_180 Hb_003517_070--Hb_003340_010 Hb_004917_010 Hb_004917_010 Hb_003517_070--Hb_004917_010 Hb_000392_160 Hb_000392_160 Hb_003517_070--Hb_000392_160 Hb_000803_320 Hb_000803_320 Hb_003517_070--Hb_000803_320 Hb_003517_070--Hb_001080_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.35215 2.11804 2.20888 3.3338 1.14698 1.64959
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.68012 1.96933 2.41577 3.64193 4.74316

CAGE analysis