Hb_001975_160

Information

Type -
Description -
Location Contig1975: 141538-147211
Sequence    

Annotation

kegg
ID rcu:RCOM_1394930
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002532584.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q8GZA6
description Pentatricopeptide repeat-containing protein At1g71210 OS=Arabidopsis thaliana GN=At1g71210 PE=2 SV=1
trembl
ID B9T2W5
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1394930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19844: 143271-144195 , PASA_asmbl_19846: 147097-147519
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001975_160 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_001507_020 0.0574802102 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
3 Hb_000317_020 0.0641106231 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
4 Hb_013405_030 0.0690598274 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000776_110 0.0724396511 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
6 Hb_007757_110 0.0758025256 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
7 Hb_000152_820 0.0764143681 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
8 Hb_001269_550 0.0772998609 - - hypothetical protein POPTR_0001s03510g [Populus trichocarpa]
9 Hb_175338_030 0.0809738127 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
10 Hb_001584_150 0.0814354501 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
11 Hb_002496_030 0.0839868841 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
12 Hb_000453_170 0.0852712897 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_010175_020 0.0873856084 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_000619_080 0.0876719987 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 21 [Jatropha curcas]
15 Hb_002518_140 0.0903021064 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
16 Hb_001956_200 0.0906926254 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
17 Hb_003687_100 0.0924517328 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
18 Hb_001085_170 0.0939492555 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
19 Hb_000203_160 0.0939518852 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
20 Hb_004837_040 0.094495253 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]

Gene co-expression network

sample Hb_001975_160 Hb_001975_160 Hb_001507_020 Hb_001507_020 Hb_001975_160--Hb_001507_020 Hb_000317_020 Hb_000317_020 Hb_001975_160--Hb_000317_020 Hb_013405_030 Hb_013405_030 Hb_001975_160--Hb_013405_030 Hb_000776_110 Hb_000776_110 Hb_001975_160--Hb_000776_110 Hb_007757_110 Hb_007757_110 Hb_001975_160--Hb_007757_110 Hb_000152_820 Hb_000152_820 Hb_001975_160--Hb_000152_820 Hb_002678_020 Hb_002678_020 Hb_001507_020--Hb_002678_020 Hb_004684_010 Hb_004684_010 Hb_001507_020--Hb_004684_010 Hb_001584_150 Hb_001584_150 Hb_001507_020--Hb_001584_150 Hb_003464_060 Hb_003464_060 Hb_001507_020--Hb_003464_060 Hb_001507_020--Hb_007757_110 Hb_000317_020--Hb_000152_820 Hb_001736_040 Hb_001736_040 Hb_000317_020--Hb_001736_040 Hb_002876_110 Hb_002876_110 Hb_000317_020--Hb_002876_110 Hb_000661_050 Hb_000661_050 Hb_000317_020--Hb_000661_050 Hb_004600_040 Hb_004600_040 Hb_000317_020--Hb_004600_040 Hb_000574_390 Hb_000574_390 Hb_013405_030--Hb_000574_390 Hb_002518_140 Hb_002518_140 Hb_013405_030--Hb_002518_140 Hb_000047_030 Hb_000047_030 Hb_013405_030--Hb_000047_030 Hb_013405_030--Hb_001507_020 Hb_015198_020 Hb_015198_020 Hb_013405_030--Hb_015198_020 Hb_001269_550 Hb_001269_550 Hb_000776_110--Hb_001269_550 Hb_000776_110--Hb_000152_820 Hb_001159_100 Hb_001159_100 Hb_000776_110--Hb_001159_100 Hb_002039_010 Hb_002039_010 Hb_000776_110--Hb_002039_010 Hb_000776_110--Hb_000317_020 Hb_010175_020 Hb_010175_020 Hb_007757_110--Hb_010175_020 Hb_002307_100 Hb_002307_100 Hb_007757_110--Hb_002307_100 Hb_007757_110--Hb_001584_150 Hb_007757_110--Hb_000152_820 Hb_175338_030 Hb_175338_030 Hb_007757_110--Hb_175338_030 Hb_000390_070 Hb_000390_070 Hb_007757_110--Hb_000390_070 Hb_000152_820--Hb_010175_020 Hb_000152_820--Hb_001736_040 Hb_000152_820--Hb_001269_550
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.74722 3.74574 1.276 1.64204 5.30796 5.21821
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.65183 4.33624 8.60246 3.38506 3.12591

CAGE analysis