Hb_001976_020

Information

Type -
Description -
Location Contig1976: 9884-12871
Sequence    

Annotation

kegg
ID rcu:RCOM_0320400
description hypothetical protein
nr
ID XP_002534923.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T9K4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0320400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19848: 9540-12907
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001976_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000979_160 0.0993680522 - - hypothetical protein RCOM_0629030 [Ricinus communis]
3 Hb_002097_080 0.110361031 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]
4 Hb_098795_030 0.1211902234 - - PREDICTED: metal tolerance protein 1-like [Vitis vinifera]
5 Hb_002685_220 0.12531115 - - PREDICTED: cationic amino acid transporter 4, vacuolar-like isoform X1 [Jatropha curcas]
6 Hb_000959_120 0.1320730194 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
7 Hb_007590_100 0.1345272266 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
8 Hb_073808_010 0.1548991524 desease resistance Gene Name: DUF594 ATP binding protein, putative [Ricinus communis]
9 Hb_134014_010 0.1550834985 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
10 Hb_001728_130 0.1553428863 - - alcohol dehydrogenase, putative [Ricinus communis]
11 Hb_003001_130 0.1562130472 - - conserved hypothetical protein [Ricinus communis]
12 Hb_034507_010 0.156818783 transcription factor TF Family: MYB MYB transcription factor [Hevea brasiliensis]
13 Hb_006615_230 0.1571473253 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
14 Hb_009222_080 0.157801102 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
15 Hb_000483_130 0.1595151173 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
16 Hb_002495_030 0.1599165727 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
17 Hb_013420_080 0.1617214669 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004462_030 0.1625501563 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
19 Hb_000095_070 0.1633551154 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002740_100 0.1647137795 - - Rhicadhesin receptor precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001976_020 Hb_001976_020 Hb_000979_160 Hb_000979_160 Hb_001976_020--Hb_000979_160 Hb_002097_080 Hb_002097_080 Hb_001976_020--Hb_002097_080 Hb_098795_030 Hb_098795_030 Hb_001976_020--Hb_098795_030 Hb_002685_220 Hb_002685_220 Hb_001976_020--Hb_002685_220 Hb_000959_120 Hb_000959_120 Hb_001976_020--Hb_000959_120 Hb_007590_100 Hb_007590_100 Hb_001976_020--Hb_007590_100 Hb_000979_160--Hb_000959_120 Hb_007027_010 Hb_007027_010 Hb_000979_160--Hb_007027_010 Hb_000979_160--Hb_002097_080 Hb_001247_270 Hb_001247_270 Hb_000979_160--Hb_001247_270 Hb_003006_080 Hb_003006_080 Hb_000979_160--Hb_003006_080 Hb_002097_080--Hb_002685_220 Hb_014361_040 Hb_014361_040 Hb_002097_080--Hb_014361_040 Hb_002097_080--Hb_098795_030 Hb_002685_160 Hb_002685_160 Hb_002097_080--Hb_002685_160 Hb_000028_580 Hb_000028_580 Hb_002097_080--Hb_000028_580 Hb_006615_230 Hb_006615_230 Hb_098795_030--Hb_006615_230 Hb_002495_030 Hb_002495_030 Hb_098795_030--Hb_002495_030 Hb_003470_110 Hb_003470_110 Hb_098795_030--Hb_003470_110 Hb_098795_030--Hb_002685_220 Hb_009222_080 Hb_009222_080 Hb_002685_220--Hb_009222_080 Hb_000107_550 Hb_000107_550 Hb_002685_220--Hb_000107_550 Hb_002740_100 Hb_002740_100 Hb_002685_220--Hb_002740_100 Hb_002685_220--Hb_002495_030 Hb_000095_070 Hb_000095_070 Hb_000959_120--Hb_000095_070 Hb_000959_120--Hb_001247_270 Hb_001728_130 Hb_001728_130 Hb_000959_120--Hb_001728_130 Hb_004462_030 Hb_004462_030 Hb_000959_120--Hb_004462_030 Hb_007590_100--Hb_006615_230 Hb_187959_010 Hb_187959_010 Hb_007590_100--Hb_187959_010 Hb_007590_100--Hb_002495_030 Hb_004032_110 Hb_004032_110 Hb_007590_100--Hb_004032_110 Hb_003052_080 Hb_003052_080 Hb_007590_100--Hb_003052_080 Hb_007590_100--Hb_098795_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.382588 15.2739 7.0972 35.9656 0.201052 2.88089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.512789 1.42388 1.83012 14.1179 19.6349

CAGE analysis