Hb_001976_060

Information

Type -
Description -
Location Contig1976: 41067-47415
Sequence    

Annotation

kegg
ID rcu:RCOM_0270650
description purine permease, putative
nr
ID XP_012081676.1
description PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
swissprot
ID Q6SZ87
description Nucleobase-ascorbate transporter 11 OS=Arabidopsis thaliana GN=NAT11 PE=2 SV=1
trembl
ID A0A067K0Y3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18707 PE=4 SV=1
Gene Ontology
ID GO:0016020
description nucleobase-ascorbate transporter 11 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19856: 41960-47503 , PASA_asmbl_19857: 43456-47397
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001976_060 0.0 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
2 Hb_001623_080 0.1054191886 - - calcineurin-like phosphoesterase [Manihot esculenta]
3 Hb_001049_150 0.1157611602 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
4 Hb_001675_050 0.1208635499 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
5 Hb_000062_400 0.1369466421 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000117_030 0.1508272846 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
7 Hb_004899_340 0.1525934982 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
8 Hb_001140_170 0.1543785141 - - PREDICTED: remorin [Jatropha curcas]
9 Hb_003647_020 0.1559449097 - - hypothetical protein JCGZ_25095 [Jatropha curcas]
10 Hb_000445_150 0.1574137182 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
11 Hb_000815_230 0.1604544405 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011021_010 0.1619108462 - - kinase, putative [Ricinus communis]
13 Hb_002164_020 0.1621395672 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000011_220 0.1656610086 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
15 Hb_000505_080 0.1659950339 - - Inner membrane transport protein yjjL, putative [Ricinus communis]
16 Hb_000521_090 0.1663033211 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
17 Hb_000390_190 0.167056393 - - ATP binding protein, putative [Ricinus communis]
18 Hb_002097_100 0.1692879926 - - protein with unknown function [Ricinus communis]
19 Hb_001493_060 0.170691449 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
20 Hb_009079_050 0.1741887626 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]

Gene co-expression network

sample Hb_001976_060 Hb_001976_060 Hb_001623_080 Hb_001623_080 Hb_001976_060--Hb_001623_080 Hb_001049_150 Hb_001049_150 Hb_001976_060--Hb_001049_150 Hb_001675_050 Hb_001675_050 Hb_001976_060--Hb_001675_050 Hb_000062_400 Hb_000062_400 Hb_001976_060--Hb_000062_400 Hb_000117_030 Hb_000117_030 Hb_001976_060--Hb_000117_030 Hb_004899_340 Hb_004899_340 Hb_001976_060--Hb_004899_340 Hb_001623_080--Hb_001049_150 Hb_001623_080--Hb_004899_340 Hb_000959_300 Hb_000959_300 Hb_001623_080--Hb_000959_300 Hb_000665_190 Hb_000665_190 Hb_001623_080--Hb_000665_190 Hb_011021_010 Hb_011021_010 Hb_001623_080--Hb_011021_010 Hb_001049_150--Hb_000665_190 Hb_011926_040 Hb_011926_040 Hb_001049_150--Hb_011926_040 Hb_026549_070 Hb_026549_070 Hb_001049_150--Hb_026549_070 Hb_001049_150--Hb_000062_400 Hb_000505_080 Hb_000505_080 Hb_001675_050--Hb_000505_080 Hb_003777_250 Hb_003777_250 Hb_001675_050--Hb_003777_250 Hb_012165_020 Hb_012165_020 Hb_001675_050--Hb_012165_020 Hb_000815_230 Hb_000815_230 Hb_001675_050--Hb_000815_230 Hb_001675_050--Hb_001623_080 Hb_004306_110 Hb_004306_110 Hb_000062_400--Hb_004306_110 Hb_000390_190 Hb_000390_190 Hb_000062_400--Hb_000390_190 Hb_000684_390 Hb_000684_390 Hb_000062_400--Hb_000684_390 Hb_004735_020 Hb_004735_020 Hb_000062_400--Hb_004735_020 Hb_021495_020 Hb_021495_020 Hb_000062_400--Hb_021495_020 Hb_000521_090 Hb_000521_090 Hb_000117_030--Hb_000521_090 Hb_009079_050 Hb_009079_050 Hb_000117_030--Hb_009079_050 Hb_003462_040 Hb_003462_040 Hb_000117_030--Hb_003462_040 Hb_012799_190 Hb_012799_190 Hb_000117_030--Hb_012799_190 Hb_003226_250 Hb_003226_250 Hb_000117_030--Hb_003226_250 Hb_000270_660 Hb_000270_660 Hb_000117_030--Hb_000270_660 Hb_004899_340--Hb_011021_010 Hb_001969_140 Hb_001969_140 Hb_004899_340--Hb_001969_140 Hb_004899_340--Hb_000959_300 Hb_009838_020 Hb_009838_020 Hb_004899_340--Hb_009838_020 Hb_014361_090 Hb_014361_090 Hb_004899_340--Hb_014361_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.02497 5.22992 11.3973 39.0962 8.91282 7.97169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.04998 1.48543 2.98197 2.40849 37.8233

CAGE analysis