Hb_001976_100

Information

Type -
Description -
Location Contig1976: 94751-98950
Sequence    

Annotation

kegg
ID rcu:RCOM_0020950
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative (EC:2.7.11.25)
nr
ID XP_012081682.1
description PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
swissprot
ID Q8H1D6
description Receptor-like cytosolic serine/threonine-protein kinase RBK1 OS=Arabidopsis thaliana GN=RBK1 PE=1 SV=1
trembl
ID A0A067K0P7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18711 PE=3 SV=1
Gene Ontology
ID GO:0004672
description receptor-like cytosolic serine threonine-protein kinase rbk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19861: 95251-95349 , PASA_asmbl_19862: 95351-95891 , PASA_asmbl_19863: 98060-98852 , PASA_asmbl_19864: 98886-99133
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001976_100 0.0 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
2 Hb_000009_250 0.0758745233 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
3 Hb_004930_020 0.0916900339 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
4 Hb_000023_180 0.0946887837 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
5 Hb_002835_070 0.0948752503 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001396_130 0.104654924 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000334_030 0.1061408751 - - conserved hypothetical protein [Ricinus communis]
8 Hb_186765_010 0.108369997 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
9 Hb_005391_050 0.1104729194 - - PREDICTED: uncharacterized protein LOC105643654 [Jatropha curcas]
10 Hb_002171_050 0.1105209158 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
11 Hb_000080_100 0.1112211135 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
12 Hb_182869_010 0.112896002 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
13 Hb_002973_050 0.1185689713 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
14 Hb_000000_290 0.1186466735 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
15 Hb_001131_050 0.1202928985 - - hypothetical protein EUGRSUZ_C02968 [Eucalyptus grandis]
16 Hb_001268_290 0.1226615404 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
17 Hb_000392_540 0.1226630641 - - PREDICTED: hypersensitive-induced response protein 1 [Sesamum indicum]
18 Hb_011224_150 0.1228577257 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
19 Hb_008001_030 0.1248715501 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
20 Hb_000963_120 0.1270361874 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001976_100 Hb_001976_100 Hb_000009_250 Hb_000009_250 Hb_001976_100--Hb_000009_250 Hb_004930_020 Hb_004930_020 Hb_001976_100--Hb_004930_020 Hb_000023_180 Hb_000023_180 Hb_001976_100--Hb_000023_180 Hb_002835_070 Hb_002835_070 Hb_001976_100--Hb_002835_070 Hb_001396_130 Hb_001396_130 Hb_001976_100--Hb_001396_130 Hb_000334_030 Hb_000334_030 Hb_001976_100--Hb_000334_030 Hb_001709_080 Hb_001709_080 Hb_000009_250--Hb_001709_080 Hb_000368_040 Hb_000368_040 Hb_000009_250--Hb_000368_040 Hb_002171_050 Hb_002171_050 Hb_000009_250--Hb_002171_050 Hb_000080_100 Hb_000080_100 Hb_000009_250--Hb_000080_100 Hb_000009_250--Hb_002835_070 Hb_004930_020--Hb_000334_030 Hb_000959_110 Hb_000959_110 Hb_004930_020--Hb_000959_110 Hb_184074_010 Hb_184074_010 Hb_004930_020--Hb_184074_010 Hb_004930_020--Hb_000009_250 Hb_001019_030 Hb_001019_030 Hb_004930_020--Hb_001019_030 Hb_000000_290 Hb_000000_290 Hb_000023_180--Hb_000000_290 Hb_005391_050 Hb_005391_050 Hb_000023_180--Hb_005391_050 Hb_000023_180--Hb_002835_070 Hb_005329_030 Hb_005329_030 Hb_000023_180--Hb_005329_030 Hb_001950_100 Hb_001950_100 Hb_000023_180--Hb_001950_100 Hb_002973_050 Hb_002973_050 Hb_002835_070--Hb_002973_050 Hb_133974_010 Hb_133974_010 Hb_002835_070--Hb_133974_010 Hb_004917_020 Hb_004917_020 Hb_002835_070--Hb_004917_020 Hb_182869_010 Hb_182869_010 Hb_002835_070--Hb_182869_010 Hb_002835_070--Hb_000000_290 Hb_186765_010 Hb_186765_010 Hb_001396_130--Hb_186765_010 Hb_000377_130 Hb_000377_130 Hb_001396_130--Hb_000377_130 Hb_006755_030 Hb_006755_030 Hb_001396_130--Hb_006755_030 Hb_044380_010 Hb_044380_010 Hb_001396_130--Hb_044380_010 Hb_000207_240 Hb_000207_240 Hb_001396_130--Hb_000207_240 Hb_000334_030--Hb_184074_010 Hb_000334_030--Hb_000959_110 Hb_001500_090 Hb_001500_090 Hb_000334_030--Hb_001500_090 Hb_002750_030 Hb_002750_030 Hb_000334_030--Hb_002750_030 Hb_000193_320 Hb_000193_320 Hb_000334_030--Hb_000193_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00986501 5.00158 2.26531 33.4329 0.0369407 0.100053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0672574 0.0352801 0 3.53687 22.8939

CAGE analysis