Hb_001977_010

Information

Type -
Description -
Location Contig1977: 13997-43079
Sequence    

Annotation

kegg
ID tcc:TCM_015803
description Uncharacterized protein isoform 1
nr
ID XP_012075158.1
description PREDICTED: uncharacterized protein LOC105636485 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061G4L9
description Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_015803 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19879: 13877-14032 , PASA_asmbl_19881: 18779-22296 , PASA_asmbl_19882: 18779-19919 , PASA_asmbl_19883: 23148-28478 , PASA_asmbl_19884: 28522-35179 , PASA_asmbl_19885: 35287-35603 , PASA_asmbl_19886: 36333-42913
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001977_010 0.0 - - PREDICTED: uncharacterized protein LOC105636485 isoform X2 [Jatropha curcas]
2 Hb_118840_030 0.0762705686 - - PREDICTED: vacuolar protein sorting-associated protein 18 homolog [Jatropha curcas]
3 Hb_002391_370 0.0915111487 - - PREDICTED: aconitate hydratase 1 [Jatropha curcas]
4 Hb_001452_220 0.0999296421 - - PREDICTED: molybdopterin biosynthesis protein CNX1 [Jatropha curcas]
5 Hb_002909_090 0.1044870789 - - PREDICTED: 4-alpha-glucanotransferase DPE2 [Jatropha curcas]
6 Hb_002260_080 0.1060134776 - - Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
7 Hb_000158_100 0.1086141298 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011287_080 0.112605492 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002028_170 0.1177557545 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
10 Hb_000640_100 0.1185724806 - - PREDICTED: probable glutamyl endopeptidase, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_005725_170 0.1198181755 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
12 Hb_007456_040 0.1204341968 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
13 Hb_005701_070 0.120746618 - - PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]
14 Hb_003913_110 0.1211940357 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
15 Hb_030627_060 0.1212652262 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
16 Hb_005143_030 0.1226245645 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
17 Hb_001034_070 0.1235001496 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_102269_010 0.1243008376 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
19 Hb_011716_020 0.1252308578 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
20 Hb_004875_030 0.1252939788 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001977_010 Hb_001977_010 Hb_118840_030 Hb_118840_030 Hb_001977_010--Hb_118840_030 Hb_002391_370 Hb_002391_370 Hb_001977_010--Hb_002391_370 Hb_001452_220 Hb_001452_220 Hb_001977_010--Hb_001452_220 Hb_002909_090 Hb_002909_090 Hb_001977_010--Hb_002909_090 Hb_002260_080 Hb_002260_080 Hb_001977_010--Hb_002260_080 Hb_000158_100 Hb_000158_100 Hb_001977_010--Hb_000158_100 Hb_118840_030--Hb_002260_080 Hb_011287_080 Hb_011287_080 Hb_118840_030--Hb_011287_080 Hb_030627_060 Hb_030627_060 Hb_118840_030--Hb_030627_060 Hb_000446_120 Hb_000446_120 Hb_118840_030--Hb_000446_120 Hb_000046_180 Hb_000046_180 Hb_118840_030--Hb_000046_180 Hb_002391_370--Hb_001452_220 Hb_000181_250 Hb_000181_250 Hb_002391_370--Hb_000181_250 Hb_002391_370--Hb_002909_090 Hb_000307_210 Hb_000307_210 Hb_002391_370--Hb_000307_210 Hb_002028_170 Hb_002028_170 Hb_002391_370--Hb_002028_170 Hb_003739_030 Hb_003739_030 Hb_001452_220--Hb_003739_030 Hb_003913_110 Hb_003913_110 Hb_001452_220--Hb_003913_110 Hb_028487_010 Hb_028487_010 Hb_001452_220--Hb_028487_010 Hb_001452_220--Hb_002909_090 Hb_011173_030 Hb_011173_030 Hb_001452_220--Hb_011173_030 Hb_000640_100 Hb_000640_100 Hb_002909_090--Hb_000640_100 Hb_000740_100 Hb_000740_100 Hb_002909_090--Hb_000740_100 Hb_002815_030 Hb_002815_030 Hb_002909_090--Hb_002815_030 Hb_003498_120 Hb_003498_120 Hb_002909_090--Hb_003498_120 Hb_004545_090 Hb_004545_090 Hb_002909_090--Hb_004545_090 Hb_002260_080--Hb_011287_080 Hb_002260_080--Hb_000046_180 Hb_002260_080--Hb_000158_100 Hb_011310_160 Hb_011310_160 Hb_002260_080--Hb_011310_160 Hb_000743_050 Hb_000743_050 Hb_000158_100--Hb_000743_050 Hb_003623_030 Hb_003623_030 Hb_000158_100--Hb_003623_030 Hb_000136_060 Hb_000136_060 Hb_000158_100--Hb_000136_060 Hb_000158_100--Hb_002028_170 Hb_000739_220 Hb_000739_220 Hb_000158_100--Hb_000739_220 Hb_001900_110 Hb_001900_110 Hb_000158_100--Hb_001900_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.26308 7.17596 2.50923 5.41798 8.42687 12.9605
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.4097 0.981181 2.25904 10.5814 6.71721

CAGE analysis