Hb_001979_020

Information

Type -
Description -
Location Contig1979: 21651-23308
Sequence    

Annotation

kegg
ID dosa:Os03t0141000-01
description Os03g0141000; 60S ribosomal protein L21.
nr
ID EAZ16361.1
description hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
swissprot
ID P49666
description 60S ribosomal protein L21 (Fragment) OS=Sus scrofa GN=RPL21 PE=2 SV=2
trembl
ID A3C5J8
description Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_31823 PE=4 SV=1
Gene Ontology
ID GO:0005739
description 60s ribosomal protein l21-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19887: 21615-23206
cDNA
(Sanger)
(ID:Location)		 023_B05.ab1: 21636-23130 , 052_D03.ab1: 21615-23145

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001979_020 0.0 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
2 Hb_002232_060 0.0690294911 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
3 Hb_003020_150 0.0779332092 - - tropinone reductase, putative [Ricinus communis]
4 Hb_005054_260 0.080959662 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Jatropha curcas]
5 Hb_003880_030 0.0831715119 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
6 Hb_000072_200 0.0968644865 - - PREDICTED: myb-like protein X [Jatropha curcas]
7 Hb_000384_120 0.0980423199 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
8 Hb_011485_020 0.0981674474 - - protein with unknown function [Ricinus communis]
9 Hb_002016_080 0.0984649123 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
10 Hb_000739_140 0.0997500319 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
11 Hb_000163_050 0.1001620346 - - SPLICEOSOMAL protein U1A [Populus trichocarpa]
12 Hb_001053_140 0.1002850935 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
13 Hb_000735_090 0.1018756671 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
14 Hb_007037_020 0.1023365285 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
15 Hb_000056_070 0.1041107928 - - -
16 Hb_072922_020 0.1056461308 - - SNARE-like superfamily protein [Theobroma cacao]
17 Hb_005269_080 0.1068519729 - - protein with unknown function [Ricinus communis]
18 Hb_000465_070 0.1074646656 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
19 Hb_000922_040 0.1074663419 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
20 Hb_000016_080 0.1075042173 - - PREDICTED: uncharacterized protein LOC105648533 [Jatropha curcas]

Gene co-expression network

sample Hb_001979_020 Hb_001979_020 Hb_002232_060 Hb_002232_060 Hb_001979_020--Hb_002232_060 Hb_003020_150 Hb_003020_150 Hb_001979_020--Hb_003020_150 Hb_005054_260 Hb_005054_260 Hb_001979_020--Hb_005054_260 Hb_003880_030 Hb_003880_030 Hb_001979_020--Hb_003880_030 Hb_000072_200 Hb_000072_200 Hb_001979_020--Hb_000072_200 Hb_000384_120 Hb_000384_120 Hb_001979_020--Hb_000384_120 Hb_005843_140 Hb_005843_140 Hb_002232_060--Hb_005843_140 Hb_002232_060--Hb_000072_200 Hb_002232_060--Hb_003020_150 Hb_000465_070 Hb_000465_070 Hb_002232_060--Hb_000465_070 Hb_006198_070 Hb_006198_070 Hb_002232_060--Hb_006198_070 Hb_000163_050 Hb_000163_050 Hb_003020_150--Hb_000163_050 Hb_002016_080 Hb_002016_080 Hb_003020_150--Hb_002016_080 Hb_003020_150--Hb_003880_030 Hb_002260_010 Hb_002260_010 Hb_003020_150--Hb_002260_010 Hb_000739_140 Hb_000739_140 Hb_005054_260--Hb_000739_140 Hb_009075_010 Hb_009075_010 Hb_005054_260--Hb_009075_010 Hb_005054_260--Hb_003020_150 Hb_005054_260--Hb_000384_120 Hb_005054_260--Hb_000163_050 Hb_000673_020 Hb_000673_020 Hb_003880_030--Hb_000673_020 Hb_003880_030--Hb_000384_120 Hb_072922_020 Hb_072922_020 Hb_003880_030--Hb_072922_020 Hb_001329_150 Hb_001329_150 Hb_003880_030--Hb_001329_150 Hb_000922_040 Hb_000922_040 Hb_003880_030--Hb_000922_040 Hb_000072_200--Hb_000465_070 Hb_000107_150 Hb_000107_150 Hb_000072_200--Hb_000107_150 Hb_000035_480 Hb_000035_480 Hb_000072_200--Hb_000035_480 Hb_000457_290 Hb_000457_290 Hb_000072_200--Hb_000457_290 Hb_000384_120--Hb_072922_020 Hb_000417_260 Hb_000417_260 Hb_000384_120--Hb_000417_260 Hb_000384_120--Hb_000922_040 Hb_005269_080 Hb_005269_080 Hb_000384_120--Hb_005269_080 Hb_002324_010 Hb_002324_010 Hb_000384_120--Hb_002324_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4008 19.195 40.6079 50.7477 16.9267 19.5276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.5458 153.863 66.7499 56.2055 57.992

CAGE analysis