Hb_001979_040

Information

Type -
Description -
Location Contig1979: 38081-39894
Sequence    

Annotation

kegg
ID pda:103711864
description 60S ribosomal protein L21-1
nr
ID XP_012485653.1
description PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
swissprot
ID Q9FDZ9
description 60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1
trembl
ID A0A0D2S3E2
description Gossypium raimondii chromosome 6, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_006G144300 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l21-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19889: 38068-40590 , PASA_asmbl_19890: 38493-38868
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001979_040 0.0 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
2 Hb_001484_070 0.0626027202 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005511_160 0.0715758266 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
4 Hb_000920_110 0.07379071 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
5 Hb_001780_040 0.0782392775 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
6 Hb_000731_190 0.0799471961 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
7 Hb_002235_350 0.0803041912 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
8 Hb_000417_360 0.0804204322 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
9 Hb_002518_080 0.0805751887 - - PREDICTED: uncharacterized protein LOC105639837 [Jatropha curcas]
10 Hb_001141_140 0.0812245815 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
11 Hb_000127_180 0.0817443039 - - 40S ribosomal protein S18, putative [Ricinus communis]
12 Hb_001047_230 0.0825804957 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_000035_370 0.0841821434 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001085_120 0.084676256 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
15 Hb_001504_110 0.0847236569 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
16 Hb_002056_050 0.0849992257 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
17 Hb_000025_620 0.085034792 - - hypothetical protein POPTR_0009s05200g [Populus trichocarpa]
18 Hb_006478_150 0.0888702253 - - mitochondrial ribosomal protein L24, putative [Ricinus communis]
19 Hb_022425_040 0.0894346126 - - PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
20 Hb_003226_100 0.0896089829 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]

Gene co-expression network

sample Hb_001979_040 Hb_001979_040 Hb_001484_070 Hb_001484_070 Hb_001979_040--Hb_001484_070 Hb_005511_160 Hb_005511_160 Hb_001979_040--Hb_005511_160 Hb_000920_110 Hb_000920_110 Hb_001979_040--Hb_000920_110 Hb_001780_040 Hb_001780_040 Hb_001979_040--Hb_001780_040 Hb_000731_190 Hb_000731_190 Hb_001979_040--Hb_000731_190 Hb_002235_350 Hb_002235_350 Hb_001979_040--Hb_002235_350 Hb_001484_070--Hb_000920_110 Hb_000453_120 Hb_000453_120 Hb_001484_070--Hb_000453_120 Hb_000261_140 Hb_000261_140 Hb_001484_070--Hb_000261_140 Hb_001085_120 Hb_001085_120 Hb_001484_070--Hb_001085_120 Hb_002056_050 Hb_002056_050 Hb_001484_070--Hb_002056_050 Hb_011628_040 Hb_011628_040 Hb_005511_160--Hb_011628_040 Hb_002259_070 Hb_002259_070 Hb_005511_160--Hb_002259_070 Hb_003656_070 Hb_003656_070 Hb_005511_160--Hb_003656_070 Hb_003203_040 Hb_003203_040 Hb_005511_160--Hb_003203_040 Hb_007416_030 Hb_007416_030 Hb_005511_160--Hb_007416_030 Hb_003226_100 Hb_003226_100 Hb_000920_110--Hb_003226_100 Hb_000920_110--Hb_002056_050 Hb_010175_040 Hb_010175_040 Hb_000920_110--Hb_010175_040 Hb_000479_090 Hb_000479_090 Hb_000920_110--Hb_000479_090 Hb_001616_040 Hb_001616_040 Hb_000920_110--Hb_001616_040 Hb_002768_030 Hb_002768_030 Hb_001780_040--Hb_002768_030 Hb_003683_110 Hb_003683_110 Hb_001780_040--Hb_003683_110 Hb_001780_040--Hb_002235_350 Hb_000025_620 Hb_000025_620 Hb_001780_040--Hb_000025_620 Hb_000127_180 Hb_000127_180 Hb_001780_040--Hb_000127_180 Hb_001780_040--Hb_003226_100 Hb_006478_160 Hb_006478_160 Hb_000731_190--Hb_006478_160 Hb_000417_360 Hb_000417_360 Hb_000731_190--Hb_000417_360 Hb_000571_020 Hb_000571_020 Hb_000731_190--Hb_000571_020 Hb_091433_020 Hb_091433_020 Hb_000731_190--Hb_091433_020 Hb_000035_370 Hb_000035_370 Hb_000731_190--Hb_000035_370 Hb_003540_240 Hb_003540_240 Hb_002235_350--Hb_003540_240 Hb_000574_160 Hb_000574_160 Hb_002235_350--Hb_000574_160 Hb_000906_040 Hb_000906_040 Hb_002235_350--Hb_000906_040 Hb_002235_350--Hb_001484_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
78.1431 44.8422 82.0229 44.6394 57.6734 72.3817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
111.244 259.332 117.396 76.5166 38.5612

CAGE analysis