Hb_001980_020

Information

Type -
Description -
Location Contig1980: 22049-23509
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19892: 22404-23522
cDNA
(Sanger)
(ID:Location)		 049_L15.ab1: 22521-23509

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001980_020 0.0 - - -
2 Hb_000352_150 0.0931938432 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
3 Hb_003777_070 0.1328882981 - - -
4 Hb_170116_010 0.1350377658 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
5 Hb_003253_010 0.1372221137 - - PREDICTED: uncharacterized protein LOC105111108 [Populus euphratica]
6 Hb_002875_090 0.1427793115 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_007810_050 0.1480559729 - - protein with unknown function [Ricinus communis]
8 Hb_010098_080 0.1558297058 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]
9 Hb_175445_010 0.160725877 - - Pectin methylesterase 31 isoform 2, partial [Theobroma cacao]
10 Hb_004060_010 0.1608602901 - - -
11 Hb_000928_230 0.1641897594 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001454_390 0.1662237908 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
13 Hb_004657_010 0.1680403758 - - PREDICTED: uncharacterized protein LOC105639764 [Jatropha curcas]
14 Hb_003636_090 0.1740635593 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
15 Hb_000038_130 0.1789808193 - - -
16 Hb_000270_400 0.1802225023 - - lipase, putative [Ricinus communis]
17 Hb_000221_100 0.1812034693 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
18 Hb_007849_030 0.1830997606 - - l-allo-threonine aldolase, putative [Ricinus communis]
19 Hb_000523_020 0.1835518988 - - PREDICTED: uncharacterized protein LOC105650610 [Jatropha curcas]
20 Hb_145761_010 0.1851415814 - - -

Gene co-expression network

sample Hb_001980_020 Hb_001980_020 Hb_000352_150 Hb_000352_150 Hb_001980_020--Hb_000352_150 Hb_003777_070 Hb_003777_070 Hb_001980_020--Hb_003777_070 Hb_170116_010 Hb_170116_010 Hb_001980_020--Hb_170116_010 Hb_003253_010 Hb_003253_010 Hb_001980_020--Hb_003253_010 Hb_002875_090 Hb_002875_090 Hb_001980_020--Hb_002875_090 Hb_007810_050 Hb_007810_050 Hb_001980_020--Hb_007810_050 Hb_000352_150--Hb_002875_090 Hb_000352_150--Hb_170116_010 Hb_003636_090 Hb_003636_090 Hb_000352_150--Hb_003636_090 Hb_001454_390 Hb_001454_390 Hb_000352_150--Hb_001454_390 Hb_000352_150--Hb_003253_010 Hb_003777_070--Hb_003253_010 Hb_010098_080 Hb_010098_080 Hb_003777_070--Hb_010098_080 Hb_000038_130 Hb_000038_130 Hb_003777_070--Hb_000038_130 Hb_003777_070--Hb_000352_150 Hb_003777_070--Hb_007810_050 Hb_043637_010 Hb_043637_010 Hb_170116_010--Hb_043637_010 Hb_000523_020 Hb_000523_020 Hb_170116_010--Hb_000523_020 Hb_170116_010--Hb_001454_390 Hb_170116_010--Hb_002875_090 Hb_001635_220 Hb_001635_220 Hb_170116_010--Hb_001635_220 Hb_003253_010--Hb_010098_080 Hb_003253_010--Hb_007810_050 Hb_002477_230 Hb_002477_230 Hb_003253_010--Hb_002477_230 Hb_003253_010--Hb_001454_390 Hb_000500_310 Hb_000500_310 Hb_003253_010--Hb_000500_310 Hb_002875_090--Hb_003636_090 Hb_001780_060 Hb_001780_060 Hb_002875_090--Hb_001780_060 Hb_002875_090--Hb_001454_390 Hb_003304_080 Hb_003304_080 Hb_002875_090--Hb_003304_080 Hb_007810_050--Hb_002477_230 Hb_007810_050--Hb_010098_080 Hb_175445_010 Hb_175445_010 Hb_007810_050--Hb_175445_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5973.1 41.8912 9.92277 31.0701 2703.85 2215.39
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2334.73 2816.97 566.182 103.63 2.0855

CAGE analysis