Hb_001981_020

Information

Type -
Description -
Location Contig1981: 51733-62247
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05940g
description POPTRDRAFT_804467; xanthine dehydrogenase family protein
nr
ID XP_011025516.1
description PREDICTED: xanthine dehydrogenase 1-like isoform X1 [Populus euphratica]
swissprot
ID Q8GUQ8
description Xanthine dehydrogenase 1 OS=Arabidopsis thaliana GN=XDH1 PE=1 SV=1
trembl
ID B9HNV5
description Xanthine dehydrogenase family protein OS=Populus trichocarpa GN=POPTR_0009s05940g PE=4 SV=2
Gene Ontology
ID GO:0004855
description xanthine dehydrogenase 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19893: 58907-60773
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001981_020 0.0 - - PREDICTED: xanthine dehydrogenase 1-like isoform X1 [Populus euphratica]
2 Hb_003462_170 0.1355979305 - - unnamed protein product [Vitis vinifera]
3 Hb_010964_030 0.1375244642 - - PREDICTED: uncharacterized protein LOC105647958 [Jatropha curcas]
4 Hb_030987_010 0.1442251541 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_125116_020 0.1590227341 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X5 [Populus euphratica]
6 Hb_062192_050 0.1619635352 - - -
7 Hb_000907_050 0.1625025026 - - -
8 Hb_000567_270 0.1718297456 - - hypothetical protein L484_017162 [Morus notabilis]
9 Hb_049285_010 0.1732038391 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
10 Hb_005843_060 0.1762363577 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X3 [Nelumbo nucifera]
11 Hb_057716_010 0.18092436 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
12 Hb_009826_010 0.187745179 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_003427_040 0.1878072529 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
14 Hb_003772_010 0.1897264307 - - polyprotein [Oryza australiensis]
15 Hb_007533_050 0.1908849693 - - -
16 Hb_006111_040 0.1917346019 - - PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]
17 Hb_006455_020 0.1944895075 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
18 Hb_001401_030 0.195023494 - - PREDICTED: uncharacterized protein LOC105649622 [Jatropha curcas]
19 Hb_001452_150 0.195937455 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
20 Hb_000644_020 0.1965067596 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]

Gene co-expression network

sample Hb_001981_020 Hb_001981_020 Hb_003462_170 Hb_003462_170 Hb_001981_020--Hb_003462_170 Hb_010964_030 Hb_010964_030 Hb_001981_020--Hb_010964_030 Hb_030987_010 Hb_030987_010 Hb_001981_020--Hb_030987_010 Hb_125116_020 Hb_125116_020 Hb_001981_020--Hb_125116_020 Hb_062192_050 Hb_062192_050 Hb_001981_020--Hb_062192_050 Hb_000907_050 Hb_000907_050 Hb_001981_020--Hb_000907_050 Hb_001699_020 Hb_001699_020 Hb_003462_170--Hb_001699_020 Hb_005843_060 Hb_005843_060 Hb_003462_170--Hb_005843_060 Hb_003462_170--Hb_125116_020 Hb_006455_020 Hb_006455_020 Hb_003462_170--Hb_006455_020 Hb_000644_020 Hb_000644_020 Hb_003462_170--Hb_000644_020 Hb_010964_030--Hb_030987_010 Hb_010964_030--Hb_000907_050 Hb_003772_010 Hb_003772_010 Hb_010964_030--Hb_003772_010 Hb_186580_020 Hb_186580_020 Hb_010964_030--Hb_186580_020 Hb_027970_010 Hb_027970_010 Hb_010964_030--Hb_027970_010 Hb_030987_010--Hb_000907_050 Hb_030987_010--Hb_003772_010 Hb_098361_010 Hb_098361_010 Hb_030987_010--Hb_098361_010 Hb_000581_070 Hb_000581_070 Hb_030987_010--Hb_000581_070 Hb_007668_030 Hb_007668_030 Hb_030987_010--Hb_007668_030 Hb_125116_020--Hb_005843_060 Hb_125116_020--Hb_010964_030 Hb_167457_010 Hb_167457_010 Hb_125116_020--Hb_167457_010 Hb_004052_060 Hb_004052_060 Hb_125116_020--Hb_004052_060 Hb_057716_010 Hb_057716_010 Hb_062192_050--Hb_057716_010 Hb_001401_030 Hb_001401_030 Hb_062192_050--Hb_001401_030 Hb_062192_050--Hb_000907_050 Hb_062192_050--Hb_003772_010 Hb_024248_010 Hb_024248_010 Hb_062192_050--Hb_024248_010 Hb_005676_020 Hb_005676_020 Hb_062192_050--Hb_005676_020 Hb_000907_050--Hb_003772_010 Hb_000907_050--Hb_001401_030 Hb_000907_050--Hb_024248_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0553953 0.194352 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0820469 0 0 0.682623 2.80291

CAGE analysis