Hb_001981_050

Information

Type -
Description -
Location Contig1981: 82367-85357
Sequence    

Annotation

kegg
ID pop:POPTR_0001s26630g
description POPTRDRAFT_706284; hypothetical protein
nr
ID XP_012089991.1
description PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
swissprot
ID Q70E96
description Aldehyde dehydrogenase family 3 member F1 OS=Arabidopsis thaliana GN=ALDH3F1 PE=2 SV=2
trembl
ID A0A067JQ12
description Aldehyde dehydrogenase OS=Jatropha curcas GN=JCGZ_25916 PE=3 SV=1
Gene Ontology
ID GO:0004030
description aldehyde dehydrogenase family 3 member f1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19899: 82355-85310
cDNA
(Sanger)
(ID:Location)		 035_G07.ab1: 83830-85310

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001981_050 0.0 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
2 Hb_185811_010 0.0227562432 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
3 Hb_000318_310 0.0426302864 - - hypothetical protein POPTR_0009s11190g [Populus trichocarpa]
4 Hb_003855_060 0.0496477867 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
5 Hb_007904_150 0.0620646682 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
6 Hb_004459_010 0.0627370265 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
7 Hb_000917_300 0.0645637534 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
8 Hb_000915_170 0.0713006331 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
9 Hb_002740_050 0.071628931 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
10 Hb_001926_080 0.0717010903 - - PREDICTED: uncharacterized protein LOC103454919 [Malus domestica]
11 Hb_002391_010 0.07397077 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
12 Hb_001278_120 0.0746359071 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
13 Hb_001345_050 0.0755969541 - - hypothetical protein POPTR_0014s14480g [Populus trichocarpa]
14 Hb_072771_010 0.0761564538 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
15 Hb_004943_020 0.0791802064 - - cationic amino acid transporter, putative [Ricinus communis]
16 Hb_004807_010 0.0806980991 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
17 Hb_000224_190 0.0821872324 - - zinc finger protein, putative [Ricinus communis]
18 Hb_012098_120 0.0823357309 - - PREDICTED: putative elongation of fatty acids protein DDB_G0272012 [Jatropha curcas]
19 Hb_002119_100 0.0840636784 - - cytochrome B561, putative [Ricinus communis]
20 Hb_000111_490 0.0845972091 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001981_050 Hb_001981_050 Hb_185811_010 Hb_185811_010 Hb_001981_050--Hb_185811_010 Hb_000318_310 Hb_000318_310 Hb_001981_050--Hb_000318_310 Hb_003855_060 Hb_003855_060 Hb_001981_050--Hb_003855_060 Hb_007904_150 Hb_007904_150 Hb_001981_050--Hb_007904_150 Hb_004459_010 Hb_004459_010 Hb_001981_050--Hb_004459_010 Hb_000917_300 Hb_000917_300 Hb_001981_050--Hb_000917_300 Hb_185811_010--Hb_000318_310 Hb_001345_050 Hb_001345_050 Hb_185811_010--Hb_001345_050 Hb_072771_010 Hb_072771_010 Hb_185811_010--Hb_072771_010 Hb_004807_010 Hb_004807_010 Hb_185811_010--Hb_004807_010 Hb_185811_010--Hb_003855_060 Hb_000318_310--Hb_003855_060 Hb_000318_310--Hb_007904_150 Hb_000318_310--Hb_000917_300 Hb_000318_310--Hb_004459_010 Hb_002740_050 Hb_002740_050 Hb_003855_060--Hb_002740_050 Hb_003855_060--Hb_007904_150 Hb_004943_020 Hb_004943_020 Hb_003855_060--Hb_004943_020 Hb_007904_150--Hb_002740_050 Hb_000915_170 Hb_000915_170 Hb_007904_150--Hb_000915_170 Hb_007904_150--Hb_185811_010 Hb_001278_120 Hb_001278_120 Hb_004459_010--Hb_001278_120 Hb_004459_010--Hb_000917_300 Hb_004459_010--Hb_003855_060 Hb_095744_010 Hb_095744_010 Hb_004459_010--Hb_095744_010 Hb_000232_040 Hb_000232_040 Hb_000917_300--Hb_000232_040 Hb_000917_300--Hb_185811_010 Hb_132880_010 Hb_132880_010 Hb_000917_300--Hb_132880_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.75067 36.7736 65.4816 0.0423759 0.0110447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.483966 70.9476

CAGE analysis