Hb_001981_070

Information

Type -
Description -
Location Contig1981: 98209-99311
Sequence    

Annotation

kegg
ID rcu:RCOM_1578370
description tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative (EC:2.1.1.61)
nr
ID XP_002513510.1
description tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RIE1
description tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative OS=Ricinus communis GN=RCOM_1578370 PE=3 SV=1
Gene Ontology
ID GO:0008168
description mitochondrial trna-specific 2-thiouridylase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19901: 98429-99820 , PASA_asmbl_19902: 99886-100099
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001981_070 0.0 - - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis]
2 Hb_008453_150 0.073731374 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
3 Hb_185467_020 0.0841693022 - - Cucumisin precursor, putative [Ricinus communis]
4 Hb_000084_310 0.0849306682 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
5 Hb_000165_030 0.090153913 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
6 Hb_002631_050 0.094310155 - - membrane associated ring finger 1,8, putative [Ricinus communis]
7 Hb_004852_030 0.0977774299 - - PREDICTED: uncharacterized protein LOC105639923 [Jatropha curcas]
8 Hb_000749_150 0.1015875579 - - -
9 Hb_001936_050 0.1029437054 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
10 Hb_001823_100 0.1030328628 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera]
11 Hb_057183_040 0.103190212 - - PREDICTED: WPP domain-interacting tail-anchored protein 2 [Jatropha curcas]
12 Hb_001140_200 0.1055483987 - - PREDICTED: uncharacterized protein LOC105648845 [Jatropha curcas]
13 Hb_000017_120 0.1064643388 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
14 Hb_026048_100 0.1075549521 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
15 Hb_002007_270 0.1084195997 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g05340-like [Jatropha curcas]
16 Hb_002997_170 0.1100597248 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
17 Hb_000803_150 0.1111198027 - - PREDICTED: uncharacterized protein LOC105648311 isoform X2 [Jatropha curcas]
18 Hb_012340_030 0.1112113255 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
19 Hb_003638_140 0.1156112449 - - protein binding protein, putative [Ricinus communis]
20 Hb_003297_030 0.1164414698 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]

Gene co-expression network

sample Hb_001981_070 Hb_001981_070 Hb_008453_150 Hb_008453_150 Hb_001981_070--Hb_008453_150 Hb_185467_020 Hb_185467_020 Hb_001981_070--Hb_185467_020 Hb_000084_310 Hb_000084_310 Hb_001981_070--Hb_000084_310 Hb_000165_030 Hb_000165_030 Hb_001981_070--Hb_000165_030 Hb_002631_050 Hb_002631_050 Hb_001981_070--Hb_002631_050 Hb_004852_030 Hb_004852_030 Hb_001981_070--Hb_004852_030 Hb_008453_150--Hb_185467_020 Hb_008453_150--Hb_002631_050 Hb_008453_150--Hb_000084_310 Hb_014568_030 Hb_014568_030 Hb_008453_150--Hb_014568_030 Hb_057183_040 Hb_057183_040 Hb_008453_150--Hb_057183_040 Hb_185467_020--Hb_002631_050 Hb_002874_070 Hb_002874_070 Hb_185467_020--Hb_002874_070 Hb_000803_150 Hb_000803_150 Hb_185467_020--Hb_000803_150 Hb_001936_050 Hb_001936_050 Hb_185467_020--Hb_001936_050 Hb_000084_310--Hb_002631_050 Hb_000365_360 Hb_000365_360 Hb_000084_310--Hb_000365_360 Hb_168918_020 Hb_168918_020 Hb_000084_310--Hb_168918_020 Hb_000084_310--Hb_185467_020 Hb_000162_090 Hb_000162_090 Hb_000165_030--Hb_000162_090 Hb_000749_150 Hb_000749_150 Hb_000165_030--Hb_000749_150 Hb_002997_170 Hb_002997_170 Hb_000165_030--Hb_002997_170 Hb_000905_190 Hb_000905_190 Hb_000165_030--Hb_000905_190 Hb_000156_140 Hb_000156_140 Hb_000165_030--Hb_000156_140 Hb_109842_010 Hb_109842_010 Hb_000165_030--Hb_109842_010 Hb_000017_120 Hb_000017_120 Hb_002631_050--Hb_000017_120 Hb_000340_510 Hb_000340_510 Hb_002631_050--Hb_000340_510 Hb_000733_060 Hb_000733_060 Hb_002631_050--Hb_000733_060 Hb_022256_040 Hb_022256_040 Hb_002631_050--Hb_022256_040 Hb_004852_030--Hb_000803_150 Hb_002007_270 Hb_002007_270 Hb_004852_030--Hb_002007_270 Hb_004852_030--Hb_185467_020 Hb_066807_010 Hb_066807_010 Hb_004852_030--Hb_066807_010 Hb_004852_030--Hb_000165_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.80702 1.58024 1.65663 1.8438 7.33907 10.949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.81104 6.34174 7.61935 1.56014 0.505381

CAGE analysis