Hb_001983_010

Information

Type -
Description -
Location Contig1983: 878-1250
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001983_010 0.0 - - -
2 Hb_001450_100 0.1897740558 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
3 Hb_012725_100 0.2389652114 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010317_030 0.2429499896 - - unknown [Picea sitchensis]
5 Hb_011645_030 0.2581152392 - - -
6 Hb_024272_010 0.2613909593 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
7 Hb_077211_010 0.2727390598 - - PREDICTED: lariat debranching enzyme-like [Jatropha curcas]
8 Hb_006495_080 0.2751572833 - - hypothetical protein PRUPE_ppb025438mg, partial [Prunus persica]
9 Hb_090497_010 0.2815462216 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
10 Hb_000732_280 0.2826707139 - - hypothetical protein B456_009G173700 [Gossypium raimondii]
11 Hb_130134_030 0.2863972761 transcription factor TF Family: C3H hypothetical protein JCGZ_14472 [Jatropha curcas]
12 Hb_000683_090 0.2920295673 - - stress enhanced protein [Medicago truncatula]
13 Hb_088428_010 0.294803606 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
14 Hb_130134_020 0.3007395498 - - -
15 Hb_178041_010 0.3012698813 - - PREDICTED: signal peptide peptidase-like 2 [Populus euphratica]
16 Hb_151463_010 0.3014638764 - - hypothetical protein B456_004G013100 [Gossypium raimondii]
17 Hb_095831_010 0.3041098506 - - PREDICTED: uncharacterized protein LOC104884649 [Beta vulgaris subsp. vulgaris]
18 Hb_000117_010 0.3046824161 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Malus domestica]
19 Hb_134956_010 0.305770769 - - PREDICTED: (S)-coclaurine N-methyltransferase [Jatropha curcas]
20 Hb_000117_020 0.3068600169 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001983_010 Hb_001983_010 Hb_001450_100 Hb_001450_100 Hb_001983_010--Hb_001450_100 Hb_012725_100 Hb_012725_100 Hb_001983_010--Hb_012725_100 Hb_010317_030 Hb_010317_030 Hb_001983_010--Hb_010317_030 Hb_011645_030 Hb_011645_030 Hb_001983_010--Hb_011645_030 Hb_024272_010 Hb_024272_010 Hb_001983_010--Hb_024272_010 Hb_077211_010 Hb_077211_010 Hb_001983_010--Hb_077211_010 Hb_000215_260 Hb_000215_260 Hb_001450_100--Hb_000215_260 Hb_001450_100--Hb_077211_010 Hb_001450_100--Hb_012725_100 Hb_000099_210 Hb_000099_210 Hb_001450_100--Hb_000099_210 Hb_088428_010 Hb_088428_010 Hb_001450_100--Hb_088428_010 Hb_012725_100--Hb_024272_010 Hb_090497_010 Hb_090497_010 Hb_012725_100--Hb_090497_010 Hb_013399_080 Hb_013399_080 Hb_012725_100--Hb_013399_080 Hb_012725_100--Hb_010317_030 Hb_010317_030--Hb_024272_010 Hb_007827_020 Hb_007827_020 Hb_010317_030--Hb_007827_020 Hb_007603_010 Hb_007603_010 Hb_010317_030--Hb_007603_010 Hb_071869_010 Hb_071869_010 Hb_010317_030--Hb_071869_010 Hb_005656_060 Hb_005656_060 Hb_010317_030--Hb_005656_060 Hb_011645_030--Hb_001450_100 Hb_138462_010 Hb_138462_010 Hb_011645_030--Hb_138462_010 Hb_005488_110 Hb_005488_110 Hb_011645_030--Hb_005488_110 Hb_000683_090 Hb_000683_090 Hb_011645_030--Hb_000683_090 Hb_002687_040 Hb_002687_040 Hb_011645_030--Hb_002687_040 Hb_024272_010--Hb_007827_020 Hb_007810_100 Hb_007810_100 Hb_024272_010--Hb_007810_100 Hb_024272_010--Hb_071869_010 Hb_003106_010 Hb_003106_010 Hb_024272_010--Hb_003106_010 Hb_130134_030 Hb_130134_030 Hb_077211_010--Hb_130134_030 Hb_183980_010 Hb_183980_010 Hb_077211_010--Hb_183980_010 Hb_007137_060 Hb_007137_060 Hb_077211_010--Hb_007137_060 Hb_006960_030 Hb_006960_030 Hb_077211_010--Hb_006960_030 Hb_003297_020 Hb_003297_020 Hb_077211_010--Hb_003297_020 Hb_001935_190 Hb_001935_190 Hb_077211_010--Hb_001935_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.41971 0.430396 0.91473 3.47352 2.2164 10.6784
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 3.43995 0.520213 0

CAGE analysis