Hb_001985_010

Information

Type -
Description -
Location Contig1985: 81778-84427
Sequence    

Annotation

kegg
ID rcu:RCOM_1712450
description hypothetical protein
nr
ID XP_002524160.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SDU1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1712450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001985_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_027556_080 0.0877523033 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 [Jatropha curcas]
3 Hb_054886_010 0.1039678975 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000336_170 0.1063275975 - - Polcalcin Jun o, putative [Ricinus communis]
5 Hb_163950_060 0.1066993878 - - multidrug resistance pump, putative [Ricinus communis]
6 Hb_011980_020 0.1092520085 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_007943_040 0.1120482179 - - hypothetical protein JCGZ_07271 [Jatropha curcas]
8 Hb_005529_050 0.1147876562 - - PREDICTED: cytochrome P450 94B3-like [Nelumbo nucifera]
9 Hb_004096_040 0.1210721706 - - cytochrome P450, putative [Ricinus communis]
10 Hb_000215_120 0.1215950875 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
11 Hb_001796_010 0.1218067966 - - purine transporter, putative [Ricinus communis]
12 Hb_009897_030 0.1288539498 - - -
13 Hb_018609_010 0.1291378612 - - conserved hypothetical protein [Ricinus communis]
14 Hb_186671_020 0.1302553447 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_028487_080 0.1325127159 - - Pectinesterase-1 precursor, putative [Ricinus communis]
16 Hb_004059_010 0.1333086669 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
17 Hb_005687_020 0.1348884645 - - P66 protein [Hevea brasiliensis]
18 Hb_000261_540 0.138209953 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Jatropha curcas]
19 Hb_008978_010 0.1390586807 - - transmembrane receptor, putative [Ricinus communis]
20 Hb_001277_150 0.1423570569 - - hypothetical protein VITISV_043492 [Vitis vinifera]

Gene co-expression network

sample Hb_001985_010 Hb_001985_010 Hb_027556_080 Hb_027556_080 Hb_001985_010--Hb_027556_080 Hb_054886_010 Hb_054886_010 Hb_001985_010--Hb_054886_010 Hb_000336_170 Hb_000336_170 Hb_001985_010--Hb_000336_170 Hb_163950_060 Hb_163950_060 Hb_001985_010--Hb_163950_060 Hb_011980_020 Hb_011980_020 Hb_001985_010--Hb_011980_020 Hb_007943_040 Hb_007943_040 Hb_001985_010--Hb_007943_040 Hb_005529_050 Hb_005529_050 Hb_027556_080--Hb_005529_050 Hb_027556_080--Hb_163950_060 Hb_027556_080--Hb_011980_020 Hb_027556_080--Hb_000336_170 Hb_027556_080--Hb_007943_040 Hb_028487_080 Hb_028487_080 Hb_054886_010--Hb_028487_080 Hb_000414_100 Hb_000414_100 Hb_054886_010--Hb_000414_100 Hb_054886_010--Hb_027556_080 Hb_054886_010--Hb_005529_050 Hb_001277_150 Hb_001277_150 Hb_054886_010--Hb_001277_150 Hb_000261_540 Hb_000261_540 Hb_000336_170--Hb_000261_540 Hb_000336_170--Hb_163950_060 Hb_000336_170--Hb_007943_040 Hb_008978_010 Hb_008978_010 Hb_000336_170--Hb_008978_010 Hb_000336_170--Hb_011980_020 Hb_009897_030 Hb_009897_030 Hb_000336_170--Hb_009897_030 Hb_163950_060--Hb_011980_020 Hb_163950_060--Hb_007943_040 Hb_163950_060--Hb_008978_010 Hb_186671_020 Hb_186671_020 Hb_163950_060--Hb_186671_020 Hb_005687_020 Hb_005687_020 Hb_163950_060--Hb_005687_020 Hb_011980_020--Hb_007943_040 Hb_011980_020--Hb_005687_020 Hb_001796_010 Hb_001796_010 Hb_011980_020--Hb_001796_010 Hb_011980_020--Hb_008978_010 Hb_007943_040--Hb_009897_030 Hb_007943_040--Hb_000261_540 Hb_013057_010 Hb_013057_010 Hb_007943_040--Hb_013057_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 9.91656 0 0.290349 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0432897 0.102153 0 0.0273094 0.0702505

CAGE analysis