Hb_001987_010

Information

Type -
Description -
Location Contig1987: 48006-49684
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001987_010 0.0 - - -
2 Hb_003551_030 0.0456660038 - - hypothetical protein POPTR_0016s03850g [Populus trichocarpa]
3 Hb_001693_040 0.0820813296 - - -
4 Hb_000205_340 0.0936502997 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
5 Hb_012424_010 0.1585865354 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
6 Hb_000296_060 0.1665889493 - - -
7 Hb_069783_020 0.1726333937 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
8 Hb_002571_090 0.1874628007 - - -
9 Hb_000276_050 0.1926415599 - - -
10 Hb_010736_030 0.2041211925 - - -
11 Hb_187513_010 0.2159760877 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
12 Hb_143874_010 0.2542285693 - - PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
13 Hb_006157_050 0.2760204574 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_065943_010 0.2773871071 - - -
15 Hb_099723_010 0.2809265018 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
16 Hb_000940_190 0.2820822643 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
17 Hb_060455_010 0.2963137179 - - 50 kDa protein [Hevea brasiliensis]
18 Hb_000705_280 0.2966279553 - - PREDICTED: uncharacterized protein LOC104601116 [Nelumbo nucifera]
19 Hb_008839_030 0.298318224 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000574_550 0.3011986629 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]

Gene co-expression network

sample Hb_001987_010 Hb_001987_010 Hb_003551_030 Hb_003551_030 Hb_001987_010--Hb_003551_030 Hb_001693_040 Hb_001693_040 Hb_001987_010--Hb_001693_040 Hb_000205_340 Hb_000205_340 Hb_001987_010--Hb_000205_340 Hb_012424_010 Hb_012424_010 Hb_001987_010--Hb_012424_010 Hb_000296_060 Hb_000296_060 Hb_001987_010--Hb_000296_060 Hb_069783_020 Hb_069783_020 Hb_001987_010--Hb_069783_020 Hb_003551_030--Hb_001693_040 Hb_003551_030--Hb_000205_340 Hb_003551_030--Hb_069783_020 Hb_003551_030--Hb_012424_010 Hb_003551_030--Hb_000296_060 Hb_001693_040--Hb_000205_340 Hb_001693_040--Hb_069783_020 Hb_001693_040--Hb_012424_010 Hb_001693_040--Hb_000296_060 Hb_002571_090 Hb_002571_090 Hb_000205_340--Hb_002571_090 Hb_000205_340--Hb_000296_060 Hb_000205_340--Hb_012424_010 Hb_012424_010--Hb_069783_020 Hb_012424_010--Hb_000296_060 Hb_187513_010 Hb_187513_010 Hb_012424_010--Hb_187513_010 Hb_000296_060--Hb_187513_010 Hb_000296_060--Hb_002571_090 Hb_000296_060--Hb_069783_020 Hb_069783_020--Hb_187513_010 Hb_000276_050 Hb_000276_050 Hb_069783_020--Hb_000276_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.927419 0.0606477 0.254935

CAGE analysis