Hb_001989_060

Information

Type transcription factor
Description TF Family: NAC
Location Contig1989: 113209-116303
Sequence    

Annotation

kegg
ID rcu:RCOM_0757170
description transcription factor, putative
nr
ID XP_012072819.1
description PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
swissprot
ID Q9SCK6
description NAC domain-containing protein 62 OS=Arabidopsis thaliana GN=NAC062 PE=1 SV=1
trembl
ID R4NHR7
description NAC transcription factor 054 OS=Jatropha curcas GN=JCGZ_08268 PE=4 SV=1
Gene Ontology
ID GO:0003677
description nac domain-containing protein 78

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19950: 113211-116274 , PASA_asmbl_19951: 113211-116274
cDNA
(Sanger)
(ID:Location)		 024_K15.ab1: 115539-116150

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001989_060 0.0 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
2 Hb_000283_100 0.0853374568 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
3 Hb_010126_030 0.0908040653 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
4 Hb_007120_010 0.1089285413 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]
5 Hb_011930_120 0.1132130132 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
6 Hb_004586_130 0.1165587383 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000680_180 0.1197725412 - - hypothetical protein JCGZ_15248 [Jatropha curcas]
8 Hb_000805_040 0.1197815348 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
9 Hb_001863_270 0.1211564771 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
10 Hb_000045_140 0.1257478157 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
11 Hb_000373_250 0.1269322675 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
12 Hb_000086_620 0.1276469308 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
13 Hb_000451_040 0.1293352652 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011360_090 0.1318893958 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
15 Hb_004712_160 0.1328802032 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
16 Hb_061908_030 0.1365703393 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
17 Hb_009040_010 0.1374445261 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
18 Hb_002498_250 0.1389710154 - - 5'-adenylylsulfate reductase 1, chloroplast precursor, putative [Ricinus communis]
19 Hb_000284_180 0.139016616 - - hypothetical protein EUGRSUZ_B01865 [Eucalyptus grandis]
20 Hb_010589_130 0.1420365241 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_001989_060 Hb_001989_060 Hb_000283_100 Hb_000283_100 Hb_001989_060--Hb_000283_100 Hb_010126_030 Hb_010126_030 Hb_001989_060--Hb_010126_030 Hb_007120_010 Hb_007120_010 Hb_001989_060--Hb_007120_010 Hb_011930_120 Hb_011930_120 Hb_001989_060--Hb_011930_120 Hb_004586_130 Hb_004586_130 Hb_001989_060--Hb_004586_130 Hb_000680_180 Hb_000680_180 Hb_001989_060--Hb_000680_180 Hb_000283_100--Hb_010126_030 Hb_000283_100--Hb_004586_130 Hb_000045_140 Hb_000045_140 Hb_000283_100--Hb_000045_140 Hb_000283_100--Hb_000680_180 Hb_000336_060 Hb_000336_060 Hb_000283_100--Hb_000336_060 Hb_010126_030--Hb_004586_130 Hb_061908_030 Hb_061908_030 Hb_010126_030--Hb_061908_030 Hb_010126_030--Hb_000680_180 Hb_001999_170 Hb_001999_170 Hb_010126_030--Hb_001999_170 Hb_000373_250 Hb_000373_250 Hb_007120_010--Hb_000373_250 Hb_000805_040 Hb_000805_040 Hb_007120_010--Hb_000805_040 Hb_001863_270 Hb_001863_270 Hb_007120_010--Hb_001863_270 Hb_007120_010--Hb_000045_140 Hb_002498_250 Hb_002498_250 Hb_007120_010--Hb_002498_250 Hb_001579_070 Hb_001579_070 Hb_011930_120--Hb_001579_070 Hb_011930_120--Hb_000680_180 Hb_000086_620 Hb_000086_620 Hb_011930_120--Hb_000086_620 Hb_011930_120--Hb_000805_040 Hb_011930_120--Hb_002498_250 Hb_002151_130 Hb_002151_130 Hb_004586_130--Hb_002151_130 Hb_000221_230 Hb_000221_230 Hb_004586_130--Hb_000221_230 Hb_002876_070 Hb_002876_070 Hb_004586_130--Hb_002876_070 Hb_002007_070 Hb_002007_070 Hb_000680_180--Hb_002007_070 Hb_000680_180--Hb_001579_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.9315 647.39 334.788 148.759 21.0617 34.3572
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.7198 15.4792 20.0975 20.357 67.765

CAGE analysis