Hb_001989_070

Information

Type -
Description -
Location Contig1989: 122795-127709
Sequence    

Annotation

kegg
ID rcu:RCOM_0757190
description carbon catabolite repressor protein, putative
nr
ID XP_012072820.1
description PREDICTED: uncharacterized calcium-binding protein At1g02270 [Jatropha curcas]
swissprot
ID O81916
description Uncharacterized calcium-binding protein At1g02270 OS=Arabidopsis thaliana GN=At1g02270 PE=2 SV=2
trembl
ID A0A067L0F8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08270 PE=4 SV=1
Gene Ontology
ID GO:0004518
description uncharacterized calcium-binding protein at1g02270

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19954: 123340-124039 , PASA_asmbl_19955: 126260-127560 , PASA_asmbl_19956: 126581-127545 , PASA_asmbl_19957: 127598-128040
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001989_070 0.0 - - PREDICTED: uncharacterized calcium-binding protein At1g02270 [Jatropha curcas]
2 Hb_000365_180 0.0790595532 - - PREDICTED: protein LURP-one-related 8-like [Pyrus x bretschneideri]
3 Hb_002010_100 0.1002727625 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
4 Hb_008749_010 0.1028473801 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
5 Hb_007483_080 0.1054124305 - - hypothetical protein RCOM_0634810 [Ricinus communis]
6 Hb_002849_180 0.1153554454 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
7 Hb_033187_020 0.1154034247 - - hypothetical protein CARUB_v10004250mg, partial [Capsella rubella]
8 Hb_005463_070 0.1184027444 - - calcium ion binding protein, putative [Ricinus communis]
9 Hb_000007_440 0.1185940419 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
10 Hb_009476_070 0.1194778672 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
11 Hb_000163_180 0.1227896527 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
12 Hb_001254_020 0.1239779067 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
13 Hb_007894_120 0.1259131103 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
14 Hb_001357_060 0.1275779567 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 18-like [Cicer arietinum]
15 Hb_001158_120 0.1290403298 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
16 Hb_028928_020 0.1316849565 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]
17 Hb_000152_170 0.132077652 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
18 Hb_006483_090 0.1332097803 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
19 Hb_000320_450 0.1337360815 - - secretory peroxidase [Hevea brasiliensis]
20 Hb_000071_090 0.1344121088 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001989_070 Hb_001989_070 Hb_000365_180 Hb_000365_180 Hb_001989_070--Hb_000365_180 Hb_002010_100 Hb_002010_100 Hb_001989_070--Hb_002010_100 Hb_008749_010 Hb_008749_010 Hb_001989_070--Hb_008749_010 Hb_007483_080 Hb_007483_080 Hb_001989_070--Hb_007483_080 Hb_002849_180 Hb_002849_180 Hb_001989_070--Hb_002849_180 Hb_033187_020 Hb_033187_020 Hb_001989_070--Hb_033187_020 Hb_009476_070 Hb_009476_070 Hb_000365_180--Hb_009476_070 Hb_000163_180 Hb_000163_180 Hb_000365_180--Hb_000163_180 Hb_000365_180--Hb_008749_010 Hb_000365_180--Hb_002010_100 Hb_000365_180--Hb_033187_020 Hb_002010_100--Hb_007483_080 Hb_002361_010 Hb_002361_010 Hb_002010_100--Hb_002361_010 Hb_005016_080 Hb_005016_080 Hb_002010_100--Hb_005016_080 Hb_005463_070 Hb_005463_070 Hb_002010_100--Hb_005463_070 Hb_000318_050 Hb_000318_050 Hb_002010_100--Hb_000318_050 Hb_003747_250 Hb_003747_250 Hb_008749_010--Hb_003747_250 Hb_000878_090 Hb_000878_090 Hb_008749_010--Hb_000878_090 Hb_008749_010--Hb_000163_180 Hb_004228_070 Hb_004228_070 Hb_008749_010--Hb_004228_070 Hb_000007_440 Hb_000007_440 Hb_007483_080--Hb_000007_440 Hb_007483_080--Hb_002361_010 Hb_007483_080--Hb_002849_180 Hb_001158_120 Hb_001158_120 Hb_007483_080--Hb_001158_120 Hb_000500_230 Hb_000500_230 Hb_007483_080--Hb_000500_230 Hb_002849_180--Hb_000007_440 Hb_000320_450 Hb_000320_450 Hb_002849_180--Hb_000320_450 Hb_006483_090 Hb_006483_090 Hb_002849_180--Hb_006483_090 Hb_000613_250 Hb_000613_250 Hb_002849_180--Hb_000613_250 Hb_012308_050 Hb_012308_050 Hb_002849_180--Hb_012308_050 Hb_028928_020 Hb_028928_020 Hb_033187_020--Hb_028928_020 Hb_000054_140 Hb_000054_140 Hb_033187_020--Hb_000054_140 Hb_002097_130 Hb_002097_130 Hb_033187_020--Hb_002097_130 Hb_006736_040 Hb_006736_040 Hb_033187_020--Hb_006736_040 Hb_024650_010 Hb_024650_010 Hb_033187_020--Hb_024650_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.15132 3.89213 4.41668 3.38107 0.0574724 0.0371979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.090442 0 1.42511 2.10147

CAGE analysis