Hb_001989_090

Information

Type -
Description -
Location Contig1989: 176969-180727
Sequence    

Annotation

kegg
ID tcc:TCM_015542
description SPFH/Band 7/PHB domain-containing membrane-associated protein family isoform 1
nr
ID XP_012074826.1
description PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
swissprot
ID O60121
description Uncharacterized protein C16G5.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16G5.07c PE=3 SV=1
trembl
ID A0A067LC84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14924 PE=4 SV=1
Gene Ontology
ID GO:0016020
description stomatin-like protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19960: 179442-179659
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001989_090 0.0 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
2 Hb_000735_090 0.0654862631 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
3 Hb_007065_010 0.0762598792 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
4 Hb_000836_470 0.0819172367 - - -
5 Hb_001728_030 0.0895367634 - - 60S ribosomal protein L15 [Populus trichocarpa]
6 Hb_005305_150 0.091545406 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
7 Hb_002798_020 0.0922078159 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
8 Hb_000016_080 0.0929464228 - - PREDICTED: uncharacterized protein LOC105648533 [Jatropha curcas]
9 Hb_004216_050 0.0930282783 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
10 Hb_004157_030 0.0943202721 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
11 Hb_000453_120 0.0950539452 - - PREDICTED: proteasome subunit alpha type-3 [Jatropha curcas]
12 Hb_003494_050 0.0968569269 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
13 Hb_002056_050 0.0976044895 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
14 Hb_004767_080 0.1006911995 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
15 Hb_001512_080 0.1008041493 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
16 Hb_002110_200 0.1018235526 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_000254_050 0.1024352191 - - hypothetical protein VITISV_010510 [Vitis vinifera]
18 Hb_000172_320 0.1026741175 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
19 Hb_006573_020 0.1039018415 - - PREDICTED: 40S ribosomal protein S10-like [Jatropha curcas]
20 Hb_004567_120 0.1043734731 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]

Gene co-expression network

sample Hb_001989_090 Hb_001989_090 Hb_000735_090 Hb_000735_090 Hb_001989_090--Hb_000735_090 Hb_007065_010 Hb_007065_010 Hb_001989_090--Hb_007065_010 Hb_000836_470 Hb_000836_470 Hb_001989_090--Hb_000836_470 Hb_001728_030 Hb_001728_030 Hb_001989_090--Hb_001728_030 Hb_005305_150 Hb_005305_150 Hb_001989_090--Hb_005305_150 Hb_002798_020 Hb_002798_020 Hb_001989_090--Hb_002798_020 Hb_007747_050 Hb_007747_050 Hb_000735_090--Hb_007747_050 Hb_000735_090--Hb_007065_010 Hb_003494_050 Hb_003494_050 Hb_000735_090--Hb_003494_050 Hb_000016_080 Hb_000016_080 Hb_000735_090--Hb_000016_080 Hb_000085_350 Hb_000085_350 Hb_000735_090--Hb_000085_350 Hb_007065_010--Hb_002798_020 Hb_000789_230 Hb_000789_230 Hb_007065_010--Hb_000789_230 Hb_007065_010--Hb_000016_080 Hb_002613_020 Hb_002613_020 Hb_007065_010--Hb_002613_020 Hb_000836_470--Hb_001728_030 Hb_002811_170 Hb_002811_170 Hb_000836_470--Hb_002811_170 Hb_003018_020 Hb_003018_020 Hb_000836_470--Hb_003018_020 Hb_003018_010 Hb_003018_010 Hb_000836_470--Hb_003018_010 Hb_000836_470--Hb_002798_020 Hb_002056_050 Hb_002056_050 Hb_000836_470--Hb_002056_050 Hb_001728_030--Hb_002811_170 Hb_002078_140 Hb_002078_140 Hb_001728_030--Hb_002078_140 Hb_001016_150 Hb_001016_150 Hb_001728_030--Hb_001016_150 Hb_000172_320 Hb_000172_320 Hb_001728_030--Hb_000172_320 Hb_003098_020 Hb_003098_020 Hb_005305_150--Hb_003098_020 Hb_004767_080 Hb_004767_080 Hb_005305_150--Hb_004767_080 Hb_004216_050 Hb_004216_050 Hb_005305_150--Hb_004216_050 Hb_001545_170 Hb_001545_170 Hb_005305_150--Hb_001545_170 Hb_000496_120 Hb_000496_120 Hb_005305_150--Hb_000496_120 Hb_001814_050 Hb_001814_050 Hb_005305_150--Hb_001814_050 Hb_007576_170 Hb_007576_170 Hb_002798_020--Hb_007576_170 Hb_000265_050 Hb_000265_050 Hb_002798_020--Hb_000265_050 Hb_003226_100 Hb_003226_100 Hb_002798_020--Hb_003226_100 Hb_004127_020 Hb_004127_020 Hb_002798_020--Hb_004127_020 Hb_002798_020--Hb_002056_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.05911 1.01743 3.41527 3.98731 3.26088 4.2967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.52124 12.6178 4.97463 5.04006 3.00518

CAGE analysis