Hb_001993_020

Information

Type -
Description -
Location Contig1993: 27264-29528
Sequence    

Annotation

kegg
ID rcu:RCOM_0845390
description multidrug resistance pump, putative
nr
ID KDP39621.1
description hypothetical protein JCGZ_02641 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KTR9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02641 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001993_020 0.0 - - hypothetical protein JCGZ_02641 [Jatropha curcas]
2 Hb_012662_010 0.1618459536 - - hypothetical protein JCGZ_06358 [Jatropha curcas]
3 Hb_027751_040 0.1827123982 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
4 Hb_000002_390 0.1887608902 - - DNA binding protein, putative [Ricinus communis]
5 Hb_000500_310 0.1916357101 - - -
6 Hb_000523_020 0.1976478018 - - PREDICTED: uncharacterized protein LOC105650610 [Jatropha curcas]
7 Hb_002477_230 0.1977253269 - - PREDICTED: verprolin [Jatropha curcas]
8 Hb_003745_010 0.2032072751 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
9 Hb_175445_010 0.2040331015 - - Pectin methylesterase 31 isoform 2, partial [Theobroma cacao]
10 Hb_002388_060 0.2070704775 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000270_400 0.2084945875 - - lipase, putative [Ricinus communis]
12 Hb_010098_080 0.2097200215 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]
13 Hb_007545_210 0.2115629725 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
14 Hb_003253_010 0.2133758745 - - PREDICTED: uncharacterized protein LOC105111108 [Populus euphratica]
15 Hb_000548_040 0.2164971888 rubber biosynthesis Gene Name: CPT1 cis-prenyltransferase1 [Hevea brasiliensis]
16 Hb_001780_060 0.220572322 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
17 Hb_027751_030 0.2222613562 - - -
18 Hb_003018_180 0.2251060162 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
19 Hb_012347_010 0.2296609325 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
20 Hb_126669_010 0.2316203022 transcription factor TF Family: bHLH lMYC4 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001993_020 Hb_001993_020 Hb_012662_010 Hb_012662_010 Hb_001993_020--Hb_012662_010 Hb_027751_040 Hb_027751_040 Hb_001993_020--Hb_027751_040 Hb_000002_390 Hb_000002_390 Hb_001993_020--Hb_000002_390 Hb_000500_310 Hb_000500_310 Hb_001993_020--Hb_000500_310 Hb_000523_020 Hb_000523_020 Hb_001993_020--Hb_000523_020 Hb_002477_230 Hb_002477_230 Hb_001993_020--Hb_002477_230 Hb_010098_080 Hb_010098_080 Hb_012662_010--Hb_010098_080 Hb_003018_180 Hb_003018_180 Hb_012662_010--Hb_003018_180 Hb_001780_060 Hb_001780_060 Hb_012662_010--Hb_001780_060 Hb_113951_010 Hb_113951_010 Hb_012662_010--Hb_113951_010 Hb_012662_010--Hb_000500_310 Hb_003745_010 Hb_003745_010 Hb_027751_040--Hb_003745_010 Hb_002843_190 Hb_002843_190 Hb_027751_040--Hb_002843_190 Hb_027751_030 Hb_027751_030 Hb_027751_040--Hb_027751_030 Hb_027751_040--Hb_012662_010 Hb_003756_010 Hb_003756_010 Hb_027751_040--Hb_003756_010 Hb_000548_040 Hb_000548_040 Hb_000002_390--Hb_000548_040 Hb_010872_060 Hb_010872_060 Hb_000002_390--Hb_010872_060 Hb_001425_120 Hb_001425_120 Hb_000002_390--Hb_001425_120 Hb_012347_010 Hb_012347_010 Hb_000002_390--Hb_012347_010 Hb_000957_040 Hb_000957_040 Hb_000002_390--Hb_000957_040 Hb_001631_070 Hb_001631_070 Hb_000002_390--Hb_001631_070 Hb_004738_090 Hb_004738_090 Hb_000500_310--Hb_004738_090 Hb_001140_160 Hb_001140_160 Hb_000500_310--Hb_001140_160 Hb_000500_310--Hb_001780_060 Hb_000500_310--Hb_010098_080 Hb_004545_150 Hb_004545_150 Hb_000500_310--Hb_004545_150 Hb_002609_260 Hb_002609_260 Hb_000500_310--Hb_002609_260 Hb_000270_400 Hb_000270_400 Hb_000523_020--Hb_000270_400 Hb_126669_010 Hb_126669_010 Hb_000523_020--Hb_126669_010 Hb_007545_210 Hb_007545_210 Hb_000523_020--Hb_007545_210 Hb_002388_060 Hb_002388_060 Hb_000523_020--Hb_002388_060 Hb_170116_010 Hb_170116_010 Hb_000523_020--Hb_170116_010 Hb_002627_060 Hb_002627_060 Hb_000523_020--Hb_002627_060 Hb_003253_010 Hb_003253_010 Hb_002477_230--Hb_003253_010 Hb_007810_050 Hb_007810_050 Hb_002477_230--Hb_007810_050 Hb_007849_030 Hb_007849_030 Hb_002477_230--Hb_007849_030 Hb_002477_230--Hb_002388_060 Hb_175445_010 Hb_175445_010 Hb_002477_230--Hb_175445_010 Hb_002477_230--Hb_010098_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.0679 0.952024 0 0 10.6488 9.55857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.4679 8.85498 15.052 1.37464 0

CAGE analysis