Hb_001994_010

Information

Type -
Description -
Location Contig1994: 17808-28333
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001994_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_074683_010 0.0989775488 - - -
3 Hb_005389_130 0.1165133521 - - hypothetical protein CICLE_v10009852mg [Citrus clementina]
4 Hb_002027_370 0.1254036605 - - conserved hypothetical protein [Ricinus communis]
5 Hb_017214_050 0.1273410152 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_015836_010 0.2060774509 - - -
7 Hb_033594_010 0.2764074138 - - -
8 Hb_012654_030 0.3157298242 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001066_010 0.321650002 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_003788_060 0.3482997846 - - PREDICTED: protein MKS1-like [Populus euphratica]
11 Hb_010803_010 0.3555177399 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
12 Hb_001221_460 0.3601167976 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
13 Hb_083103_030 0.3620022658 - - putative retrotransposon protein [Malus domestica]
14 Hb_103832_030 0.3620236394 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
15 Hb_172503_010 0.362032496 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
16 Hb_115472_010 0.3624837368 - - -
17 Hb_002740_020 0.3627424616 - - -
18 Hb_022137_030 0.3633425813 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
19 Hb_001995_020 0.3675034536 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
20 Hb_036790_010 0.3713380046 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001994_010 Hb_001994_010 Hb_074683_010 Hb_074683_010 Hb_001994_010--Hb_074683_010 Hb_005389_130 Hb_005389_130 Hb_001994_010--Hb_005389_130 Hb_002027_370 Hb_002027_370 Hb_001994_010--Hb_002027_370 Hb_017214_050 Hb_017214_050 Hb_001994_010--Hb_017214_050 Hb_015836_010 Hb_015836_010 Hb_001994_010--Hb_015836_010 Hb_033594_010 Hb_033594_010 Hb_001994_010--Hb_033594_010 Hb_074683_010--Hb_002027_370 Hb_074683_010--Hb_017214_050 Hb_074683_010--Hb_015836_010 Hb_074683_010--Hb_005389_130 Hb_074683_010--Hb_033594_010 Hb_005389_130--Hb_002027_370 Hb_005389_130--Hb_017214_050 Hb_005389_130--Hb_015836_010 Hb_012654_030 Hb_012654_030 Hb_005389_130--Hb_012654_030 Hb_002027_370--Hb_017214_050 Hb_002027_370--Hb_015836_010 Hb_001066_010 Hb_001066_010 Hb_002027_370--Hb_001066_010 Hb_017214_050--Hb_015836_010 Hb_017214_050--Hb_001066_010 Hb_106496_010 Hb_106496_010 Hb_015836_010--Hb_106496_010 Hb_006535_010 Hb_006535_010 Hb_033594_010--Hb_006535_010 Hb_033594_010--Hb_005389_130 Hb_033594_010--Hb_002027_370 Hb_033594_010--Hb_017214_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0030732 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00547312 0 0.00432915 0

CAGE analysis