Hb_001998_120

Information

Type -
Description -
Location Contig1998: 156009-167810
Sequence    

Annotation

kegg
ID vvi:100247377
description uncharacterized oxidoreductase C663.09c
nr
ID XP_012075520.1
description PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
swissprot
ID Q7Z9I2
description Uncharacterized oxidoreductase C663.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC663.09c PE=3 SV=1
trembl
ID A0A067KRE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09138 PE=4 SV=1
Gene Ontology
ID GO:0016491
description uncharacterized oxidoreductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19992: 156952-167757
cDNA
(Sanger)
(ID:Location)		 040_C23.ab1: 156956-167757

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001998_120 0.0 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
2 Hb_012016_010 0.0859547697 - - PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial [Jatropha curcas]
3 Hb_004934_030 0.0946962845 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
4 Hb_000633_020 0.0986802067 - - PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]
5 Hb_000444_080 0.1025738468 - - hypothetical protein POPTR_0019s10500g [Populus trichocarpa]
6 Hb_000260_800 0.1094469332 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Populus euphratica]
7 Hb_001476_070 0.1102853379 - - MinE protein [Manihot esculenta]
8 Hb_004410_080 0.1104559021 - - cellular nucleic acid binding protein, putative [Ricinus communis]
9 Hb_004449_170 0.1105341053 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
10 Hb_146673_010 0.1116595828 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
11 Hb_002477_300 0.112599687 - - transcription factor, putative [Ricinus communis]
12 Hb_180424_010 0.1135053848 - - Charged multivesicular body protein, putative [Ricinus communis]
13 Hb_000028_070 0.1150921571 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
14 Hb_000694_040 0.1158140339 - - Uncharacterized protein isoform 1 [Theobroma cacao]
15 Hb_000000_210 0.1167960162 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Jatropha curcas]
16 Hb_002226_060 0.11902704 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
17 Hb_004195_270 0.1195443201 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
18 Hb_002028_140 0.1208483634 transcription factor TF Family: Tify JAZ11 [Hevea brasiliensis]
19 Hb_000025_230 0.1218621951 - - PREDICTED: 10 kDa chaperonin [Vitis vinifera]
20 Hb_002163_050 0.1225111921 - - hypothetical protein POPTR_0014s15490g [Populus trichocarpa]

Gene co-expression network

sample Hb_001998_120 Hb_001998_120 Hb_012016_010 Hb_012016_010 Hb_001998_120--Hb_012016_010 Hb_004934_030 Hb_004934_030 Hb_001998_120--Hb_004934_030 Hb_000633_020 Hb_000633_020 Hb_001998_120--Hb_000633_020 Hb_000444_080 Hb_000444_080 Hb_001998_120--Hb_000444_080 Hb_000260_800 Hb_000260_800 Hb_001998_120--Hb_000260_800 Hb_001476_070 Hb_001476_070 Hb_001998_120--Hb_001476_070 Hb_000638_290 Hb_000638_290 Hb_012016_010--Hb_000638_290 Hb_000009_530 Hb_000009_530 Hb_012016_010--Hb_000009_530 Hb_003621_020 Hb_003621_020 Hb_012016_010--Hb_003621_020 Hb_004093_090 Hb_004093_090 Hb_012016_010--Hb_004093_090 Hb_012016_010--Hb_000444_080 Hb_000694_040 Hb_000694_040 Hb_004934_030--Hb_000694_040 Hb_003607_150 Hb_003607_150 Hb_004934_030--Hb_003607_150 Hb_005186_050 Hb_005186_050 Hb_004934_030--Hb_005186_050 Hb_000331_250 Hb_000331_250 Hb_004934_030--Hb_000331_250 Hb_000000_210 Hb_000000_210 Hb_004934_030--Hb_000000_210 Hb_146673_010 Hb_146673_010 Hb_000633_020--Hb_146673_010 Hb_004410_080 Hb_004410_080 Hb_000633_020--Hb_004410_080 Hb_004096_090 Hb_004096_090 Hb_000633_020--Hb_004096_090 Hb_011512_070 Hb_011512_070 Hb_000633_020--Hb_011512_070 Hb_004157_020 Hb_004157_020 Hb_000633_020--Hb_004157_020 Hb_000236_390 Hb_000236_390 Hb_000633_020--Hb_000236_390 Hb_002234_140 Hb_002234_140 Hb_000444_080--Hb_002234_140 Hb_010921_010 Hb_010921_010 Hb_000444_080--Hb_010921_010 Hb_000444_080--Hb_000009_530 Hb_001552_020 Hb_001552_020 Hb_000444_080--Hb_001552_020 Hb_000116_310 Hb_000116_310 Hb_000444_080--Hb_000116_310 Hb_001512_060 Hb_001512_060 Hb_000444_080--Hb_001512_060 Hb_002284_150 Hb_002284_150 Hb_000260_800--Hb_002284_150 Hb_000028_070 Hb_000028_070 Hb_000260_800--Hb_000028_070 Hb_000260_800--Hb_012016_010 Hb_180424_010 Hb_180424_010 Hb_000260_800--Hb_180424_010 Hb_001377_030 Hb_001377_030 Hb_000260_800--Hb_001377_030 Hb_002477_300 Hb_002477_300 Hb_001476_070--Hb_002477_300 Hb_001476_070--Hb_004934_030 Hb_004449_170 Hb_004449_170 Hb_001476_070--Hb_004449_170 Hb_001476_070--Hb_146673_010 Hb_006360_030 Hb_006360_030 Hb_001476_070--Hb_006360_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.29975 0.720322 2.25571 0.565578 1.4276 0.727334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.53437 2.30806 1.23452 0.424516 0.843119

CAGE analysis