Hb_001998_140

Information

Type -
Description -
Location Contig1998: 184803-185409
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19994: 184831-185732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001998_140 0.0 - - -
2 Hb_006198_090 0.1181477798 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
3 Hb_005679_070 0.1203255708 - - hypothetical protein M569_07741, partial [Genlisea aurea]
4 Hb_007188_030 0.1433758543 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
5 Hb_002482_060 0.1477712122 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
6 Hb_026228_010 0.1618394386 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010565_040 0.1626938384 - - hypothetical protein POPTR_0015s05280g, partial [Populus trichocarpa]
8 Hb_001260_030 0.1656367714 - - conserved hypothetical protein [Ricinus communis]
9 Hb_177103_010 0.1660158631 - - PREDICTED: histone H2AX [Elaeis guineensis]
10 Hb_029142_020 0.1674983555 - - hypothetical protein POPTR_0004s23900g [Populus trichocarpa]
11 Hb_002815_050 0.1680055871 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
12 Hb_000810_020 0.1684673436 - - -
13 Hb_005085_030 0.1726351687 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
14 Hb_000120_190 0.1788736028 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
15 Hb_169170_010 0.1804270285 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
16 Hb_000329_560 0.1818372405 - - conserved hypothetical protein [Ricinus communis]
17 Hb_068014_010 0.1902024062 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
18 Hb_116632_010 0.1912557275 - - unnamed protein product [Vitis vinifera]
19 Hb_003030_040 0.1916472498 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
20 Hb_003656_150 0.1924931515 - - -

Gene co-expression network

sample Hb_001998_140 Hb_001998_140 Hb_006198_090 Hb_006198_090 Hb_001998_140--Hb_006198_090 Hb_005679_070 Hb_005679_070 Hb_001998_140--Hb_005679_070 Hb_007188_030 Hb_007188_030 Hb_001998_140--Hb_007188_030 Hb_002482_060 Hb_002482_060 Hb_001998_140--Hb_002482_060 Hb_026228_010 Hb_026228_010 Hb_001998_140--Hb_026228_010 Hb_010565_040 Hb_010565_040 Hb_001998_140--Hb_010565_040 Hb_003656_150 Hb_003656_150 Hb_006198_090--Hb_003656_150 Hb_006198_090--Hb_007188_030 Hb_006198_090--Hb_002482_060 Hb_177103_010 Hb_177103_010 Hb_006198_090--Hb_177103_010 Hb_169170_010 Hb_169170_010 Hb_006198_090--Hb_169170_010 Hb_002815_050 Hb_002815_050 Hb_005679_070--Hb_002815_050 Hb_000329_560 Hb_000329_560 Hb_005679_070--Hb_000329_560 Hb_005085_030 Hb_005085_030 Hb_005679_070--Hb_005085_030 Hb_068014_010 Hb_068014_010 Hb_005679_070--Hb_068014_010 Hb_006663_090 Hb_006663_090 Hb_005679_070--Hb_006663_090 Hb_007188_030--Hb_003656_150 Hb_007188_030--Hb_002815_050 Hb_007188_030--Hb_177103_010 Hb_003030_040 Hb_003030_040 Hb_007188_030--Hb_003030_040 Hb_007188_030--Hb_005679_070 Hb_000120_190 Hb_000120_190 Hb_002482_060--Hb_000120_190 Hb_005731_140 Hb_005731_140 Hb_002482_060--Hb_005731_140 Hb_166480_010 Hb_166480_010 Hb_002482_060--Hb_166480_010 Hb_106005_010 Hb_106005_010 Hb_002482_060--Hb_106005_010 Hb_007763_060 Hb_007763_060 Hb_002482_060--Hb_007763_060 Hb_026228_010--Hb_000329_560 Hb_026228_010--Hb_005679_070 Hb_003688_110 Hb_003688_110 Hb_026228_010--Hb_003688_110 Hb_002200_050 Hb_002200_050 Hb_026228_010--Hb_002200_050 Hb_000810_020 Hb_000810_020 Hb_026228_010--Hb_000810_020 Hb_010565_040--Hb_177103_010 Hb_010565_040--Hb_006198_090 Hb_010565_040--Hb_005085_030 Hb_010565_040--Hb_005679_070 Hb_116632_010 Hb_116632_010 Hb_010565_040--Hb_116632_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.979646 0.880033 0.0909883 6.38606 0.229973 15.8749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.15762 3.1798 2.89564 2.45649 2.10979

CAGE analysis