Hb_001998_150

Information

Type -
Description -
Location Contig1998: 185850-187937
Sequence    

Annotation

kegg
ID rcu:RCOM_0237950
description pentatricopeptide repeat-containing protein, putative
nr
ID KDP34852.1
description hypothetical protein JCGZ_09140 [Jatropha curcas]
swissprot
ID B3H672
description Pentatricopeptide repeat-containing protein At4g17616 OS=Arabidopsis thaliana GN=At4g17616 PE=2 SV=1
trembl
ID A0A067KFF4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19994: 184831-185732 , PASA_asmbl_19996: 187746-188104
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001998_150 0.0 - - hypothetical protein JCGZ_09140 [Jatropha curcas]
2 Hb_000809_250 0.0707271043 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
3 Hb_000844_050 0.0756569421 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
4 Hb_000167_120 0.0830298424 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
5 Hb_000025_500 0.086970575 - - Ran GTPase binding protein, putative [Ricinus communis]
6 Hb_007313_040 0.0927014393 - - hypothetical protein JCGZ_23401 [Jatropha curcas]
7 Hb_048476_080 0.09298039 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
8 Hb_002400_060 0.0944570772 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
9 Hb_009178_060 0.0971204692 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_003124_270 0.0993542449 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
11 Hb_006210_010 0.0996202574 - - PREDICTED: probable acyl-activating enzyme 17, peroxisomal isoform X2 [Jatropha curcas]
12 Hb_003680_020 0.1003342955 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_003661_010 0.1009075966 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
14 Hb_001008_130 0.1014700848 transcription factor TF Family: mTERF PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]
15 Hb_000803_320 0.1016291246 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
16 Hb_000484_010 0.1019637217 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 23 [Jatropha curcas]
17 Hb_001421_090 0.1028192104 - - hypothetical protein RCOM_1278080 [Ricinus communis]
18 Hb_005914_040 0.1032000002 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
19 Hb_002609_080 0.1033507814 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
20 Hb_000186_080 0.10509526 - - PREDICTED: protein unc-45 homolog B-like [Gossypium raimondii]

Gene co-expression network

sample Hb_001998_150 Hb_001998_150 Hb_000809_250 Hb_000809_250 Hb_001998_150--Hb_000809_250 Hb_000844_050 Hb_000844_050 Hb_001998_150--Hb_000844_050 Hb_000167_120 Hb_000167_120 Hb_001998_150--Hb_000167_120 Hb_000025_500 Hb_000025_500 Hb_001998_150--Hb_000025_500 Hb_007313_040 Hb_007313_040 Hb_001998_150--Hb_007313_040 Hb_048476_080 Hb_048476_080 Hb_001998_150--Hb_048476_080 Hb_000809_250--Hb_000844_050 Hb_003124_270 Hb_003124_270 Hb_000809_250--Hb_003124_270 Hb_003680_020 Hb_003680_020 Hb_000809_250--Hb_003680_020 Hb_003661_010 Hb_003661_010 Hb_000809_250--Hb_003661_010 Hb_005181_050 Hb_005181_050 Hb_000809_250--Hb_005181_050 Hb_000844_050--Hb_048476_080 Hb_000844_050--Hb_003124_270 Hb_000844_050--Hb_003661_010 Hb_000844_050--Hb_003680_020 Hb_001507_050 Hb_001507_050 Hb_000844_050--Hb_001507_050 Hb_000167_120--Hb_005181_050 Hb_000167_120--Hb_000844_050 Hb_000167_120--Hb_003124_270 Hb_000167_120--Hb_000025_500 Hb_000167_120--Hb_003680_020 Hb_001221_300 Hb_001221_300 Hb_000025_500--Hb_001221_300 Hb_052946_010 Hb_052946_010 Hb_000025_500--Hb_052946_010 Hb_001341_010 Hb_001341_010 Hb_000025_500--Hb_001341_010 Hb_004041_030 Hb_004041_030 Hb_000025_500--Hb_004041_030 Hb_002311_130 Hb_002311_130 Hb_007313_040--Hb_002311_130 Hb_001473_170 Hb_001473_170 Hb_007313_040--Hb_001473_170 Hb_007313_040--Hb_000167_120 Hb_003517_070 Hb_003517_070 Hb_007313_040--Hb_003517_070 Hb_007313_040--Hb_000025_500 Hb_048476_080--Hb_003661_010 Hb_000103_290 Hb_000103_290 Hb_048476_080--Hb_000103_290 Hb_048476_080--Hb_001507_050 Hb_006100_020 Hb_006100_020 Hb_048476_080--Hb_006100_020 Hb_001008_130 Hb_001008_130 Hb_048476_080--Hb_001008_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.403421 1.16965 0.621208 1.2193 0.408847 0.31749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.408843 0.355557 0.482152 0.747399 1.86297

CAGE analysis