Hb_001998_170

Information

Type -
Description -
Location Contig1998: 195009-195716
Sequence    

Annotation

kegg
ID brp:103828755
description protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4
nr
ID CDX85083.1
description BnaC07g08230D [Brassica napus]
swissprot
ID Q9LMK2
description Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana GN=LSH6 PE=1 SV=1
trembl
ID A0A078JW20
description BnaCnng65050D protein OS=Brassica napus GN=BnaCnng65050D PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19999: 194900-195287
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001998_170 0.0 - - BnaC07g08230D [Brassica napus]
2 Hb_001999_100 0.1922518473 - - PREDICTED: UDP-glycosyltransferase 71D1-like [Jatropha curcas]
3 Hb_026527_010 0.2187106051 - - PREDICTED: caffeoylshikimate esterase-like [Populus euphratica]
4 Hb_020805_140 0.2192330251 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
5 Hb_000062_660 0.2215647085 - - hypothetical protein POPTR_0009s03470g [Populus trichocarpa]
6 Hb_002760_050 0.2231202871 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008699_030 0.2283483686 - - hypothetical protein CISIN_1g017963mg [Citrus sinensis]
8 Hb_000311_040 0.2284619461 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
9 Hb_002498_260 0.2289321654 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
10 Hb_003462_080 0.2300825951 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
11 Hb_104571_010 0.2302098521 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
12 Hb_000856_060 0.2310819747 - - -
13 Hb_000345_080 0.2311300731 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
14 Hb_002660_110 0.2335669564 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
15 Hb_000294_050 0.2342223193 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
16 Hb_002639_020 0.2348500106 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
17 Hb_000684_220 0.2394714616 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_006569_060 0.242576576 - - plasma membrane intrinsic protein PIP2;3 [Hevea brasiliensis]
19 Hb_000246_130 0.2428939751 - - tubulin alpha chain, putative [Ricinus communis]
20 Hb_000742_030 0.2442071475 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]

Gene co-expression network

sample Hb_001998_170 Hb_001998_170 Hb_001999_100 Hb_001999_100 Hb_001998_170--Hb_001999_100 Hb_026527_010 Hb_026527_010 Hb_001998_170--Hb_026527_010 Hb_020805_140 Hb_020805_140 Hb_001998_170--Hb_020805_140 Hb_000062_660 Hb_000062_660 Hb_001998_170--Hb_000062_660 Hb_002760_050 Hb_002760_050 Hb_001998_170--Hb_002760_050 Hb_008699_030 Hb_008699_030 Hb_001998_170--Hb_008699_030 Hb_001481_150 Hb_001481_150 Hb_001999_100--Hb_001481_150 Hb_006569_060 Hb_006569_060 Hb_001999_100--Hb_006569_060 Hb_002660_110 Hb_002660_110 Hb_001999_100--Hb_002660_110 Hb_033152_070 Hb_033152_070 Hb_001999_100--Hb_033152_070 Hb_000008_190 Hb_000008_190 Hb_001999_100--Hb_000008_190 Hb_026740_020 Hb_026740_020 Hb_001999_100--Hb_026740_020 Hb_001329_180 Hb_001329_180 Hb_026527_010--Hb_001329_180 Hb_000696_070 Hb_000696_070 Hb_026527_010--Hb_000696_070 Hb_003470_110 Hb_003470_110 Hb_026527_010--Hb_003470_110 Hb_026527_010--Hb_020805_140 Hb_002701_090 Hb_002701_090 Hb_026527_010--Hb_002701_090 Hb_002781_050 Hb_002781_050 Hb_026527_010--Hb_002781_050 Hb_000107_350 Hb_000107_350 Hb_020805_140--Hb_000107_350 Hb_069355_010 Hb_069355_010 Hb_020805_140--Hb_069355_010 Hb_025466_020 Hb_025466_020 Hb_020805_140--Hb_025466_020 Hb_000345_080 Hb_000345_080 Hb_020805_140--Hb_000345_080 Hb_020805_140--Hb_008699_030 Hb_147245_010 Hb_147245_010 Hb_000062_660--Hb_147245_010 Hb_001486_040 Hb_001486_040 Hb_000062_660--Hb_001486_040 Hb_002235_060 Hb_002235_060 Hb_000062_660--Hb_002235_060 Hb_001474_020 Hb_001474_020 Hb_000062_660--Hb_001474_020 Hb_000861_100 Hb_000861_100 Hb_000062_660--Hb_000861_100 Hb_000057_130 Hb_000057_130 Hb_000062_660--Hb_000057_130 Hb_100137_010 Hb_100137_010 Hb_002760_050--Hb_100137_010 Hb_001217_010 Hb_001217_010 Hb_002760_050--Hb_001217_010 Hb_002760_050--Hb_001999_100 Hb_122636_010 Hb_122636_010 Hb_002760_050--Hb_122636_010 Hb_000291_160 Hb_000291_160 Hb_002760_050--Hb_000291_160 Hb_002760_050--Hb_002660_110 Hb_015675_030 Hb_015675_030 Hb_008699_030--Hb_015675_030 Hb_000240_030 Hb_000240_030 Hb_008699_030--Hb_000240_030 Hb_001195_070 Hb_001195_070 Hb_008699_030--Hb_001195_070 Hb_003207_020 Hb_003207_020 Hb_008699_030--Hb_003207_020 Hb_000946_110 Hb_000946_110 Hb_008699_030--Hb_000946_110 Hb_001124_100 Hb_001124_100 Hb_008699_030--Hb_001124_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.52472 2.57766 1.93192 18.6385 1.23826 0.579433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.86875 2.94437 0.427834 1.3433 5.9948

CAGE analysis