Hb_001998_190

Information

Type transcription factor
Description TF Family: CSD
Location Contig1998: 211874-213249
Sequence    

Annotation

kegg
ID rcu:RCOM_0237690
description cold shock protein, putative
nr
ID XP_012075742.1
description PREDICTED: uncharacterized protein LOC105636942 [Jatropha curcas]
swissprot
ID P27484
description Glycine-rich protein 2 OS=Nicotiana sylvestris GN=GRP-2 PE=2 SV=1
trembl
ID B9T6B7
description Cold shock protein, putative OS=Ricinus communis GN=RCOM_0237690 PE=4 SV=1
Gene Ontology
ID GO:0003676
description glycine-rich protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001998_190 0.0 transcription factor TF Family: CSD PREDICTED: uncharacterized protein LOC105636942 [Jatropha curcas]
2 Hb_000507_010 0.0481153238 - - hypothetical protein POPTR_0007s02420g [Populus trichocarpa]
3 Hb_000933_120 0.054731951 - - hypothetical protein L484_011925 [Morus notabilis]
4 Hb_019952_010 0.058209455 - - -
5 Hb_000408_010 0.066682522 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
6 Hb_000203_030 0.0765832784 - - -
7 Hb_000059_290 0.0938985411 - - pterin-4-alpha-carbinolamine dehydratase, putative [Ricinus communis]
8 Hb_000976_420 0.1032693497 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001246_150 0.1036588489 - - hypothetical protein MIMGU_mgv1a021562mg [Erythranthe guttata]
10 Hb_005211_110 0.1141705615 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
11 Hb_048308_010 0.1142822127 - - Peroxidase superfamily protein [Theobroma cacao]
12 Hb_002481_070 0.1163448523 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
13 Hb_000856_330 0.1239112621 - - PREDICTED: protein QUIRKY isoform X1 [Cicer arietinum]
14 Hb_001300_120 0.1304636217 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
15 Hb_005545_090 0.1337343225 - - -
16 Hb_100873_040 0.1384501774 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
17 Hb_011671_200 0.1505120584 - - -
18 Hb_000343_280 0.1820293817 - - hypothetical protein JCGZ_24094 [Jatropha curcas]
19 Hb_005306_040 0.1844085599 - - calmodulin binding protein, putative [Ricinus communis]
20 Hb_008111_020 0.1880397082 - - Receptor like protein 6, putative [Theobroma cacao]

Gene co-expression network

sample Hb_001998_190 Hb_001998_190 Hb_000507_010 Hb_000507_010 Hb_001998_190--Hb_000507_010 Hb_000933_120 Hb_000933_120 Hb_001998_190--Hb_000933_120 Hb_019952_010 Hb_019952_010 Hb_001998_190--Hb_019952_010 Hb_000408_010 Hb_000408_010 Hb_001998_190--Hb_000408_010 Hb_000203_030 Hb_000203_030 Hb_001998_190--Hb_000203_030 Hb_000059_290 Hb_000059_290 Hb_001998_190--Hb_000059_290 Hb_000507_010--Hb_000933_120 Hb_000507_010--Hb_019952_010 Hb_000976_420 Hb_000976_420 Hb_000507_010--Hb_000976_420 Hb_000856_330 Hb_000856_330 Hb_000507_010--Hb_000856_330 Hb_001300_120 Hb_001300_120 Hb_000507_010--Hb_001300_120 Hb_000933_120--Hb_019952_010 Hb_000933_120--Hb_000976_420 Hb_000933_120--Hb_000856_330 Hb_000933_120--Hb_001300_120 Hb_019952_010--Hb_000976_420 Hb_019952_010--Hb_000856_330 Hb_019952_010--Hb_001300_120 Hb_002481_070 Hb_002481_070 Hb_000408_010--Hb_002481_070 Hb_000408_010--Hb_000059_290 Hb_000408_010--Hb_000203_030 Hb_000408_010--Hb_000507_010 Hb_000408_010--Hb_019952_010 Hb_000203_030--Hb_000059_290 Hb_100873_040 Hb_100873_040 Hb_000203_030--Hb_100873_040 Hb_001246_150 Hb_001246_150 Hb_000203_030--Hb_001246_150 Hb_000203_030--Hb_000507_010 Hb_047923_010 Hb_047923_010 Hb_000059_290--Hb_047923_010 Hb_000059_290--Hb_100873_040 Hb_008111_020 Hb_008111_020 Hb_000059_290--Hb_008111_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.215352 0.184748 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.121295 0

CAGE analysis