Hb_001998_210

Information

Type -
Description -
Location Contig1998: 231447-239537
Sequence    

Annotation

kegg
ID tcc:TCM_039557
description Isoamylase 1 isoform 1
nr
ID CDP17693.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID A0A068VDG2
description Coffea canephora DH200=94 genomic scaffold, scaffold_173 OS=Coffea canephora GN=GSCOC_T00001423001 PE=4 SV=1
Gene Ontology
ID GO:0010368
description isoamylase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20012: 231360-255363 , PASA_asmbl_20015: 231456-233143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001998_210 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_001414_010 0.069763565 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
3 Hb_001439_070 0.0714656175 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_001059_060 0.0775605951 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
5 Hb_004052_110 0.0787501524 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
6 Hb_009078_020 0.0792907936 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
7 Hb_000300_030 0.0800185965 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
8 Hb_003661_010 0.0804420684 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
9 Hb_000664_090 0.0851678437 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
10 Hb_011188_010 0.0885536403 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
11 Hb_005305_130 0.0905729216 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
12 Hb_003058_140 0.0910640849 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000172_360 0.0918720378 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
14 Hb_000008_280 0.0919819638 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
15 Hb_029552_020 0.0937096212 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000844_050 0.0951501904 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
17 Hb_021977_010 0.0964955533 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
18 Hb_003216_130 0.0970676506 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
19 Hb_013405_180 0.097133102 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
20 Hb_001159_060 0.0989016678 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]

Gene co-expression network

sample Hb_001998_210 Hb_001998_210 Hb_001414_010 Hb_001414_010 Hb_001998_210--Hb_001414_010 Hb_001439_070 Hb_001439_070 Hb_001998_210--Hb_001439_070 Hb_001059_060 Hb_001059_060 Hb_001998_210--Hb_001059_060 Hb_004052_110 Hb_004052_110 Hb_001998_210--Hb_004052_110 Hb_009078_020 Hb_009078_020 Hb_001998_210--Hb_009078_020 Hb_000300_030 Hb_000300_030 Hb_001998_210--Hb_000300_030 Hb_021977_010 Hb_021977_010 Hb_001414_010--Hb_021977_010 Hb_003661_010 Hb_003661_010 Hb_001414_010--Hb_003661_010 Hb_009476_120 Hb_009476_120 Hb_001414_010--Hb_009476_120 Hb_008165_020 Hb_008165_020 Hb_001414_010--Hb_008165_020 Hb_001414_010--Hb_000300_030 Hb_160608_010 Hb_160608_010 Hb_001414_010--Hb_160608_010 Hb_000617_250 Hb_000617_250 Hb_001439_070--Hb_000617_250 Hb_001439_070--Hb_003661_010 Hb_001439_070--Hb_001059_060 Hb_001439_070--Hb_004052_110 Hb_001421_090 Hb_001421_090 Hb_001439_070--Hb_001421_090 Hb_001059_060--Hb_009078_020 Hb_000853_330 Hb_000853_330 Hb_001059_060--Hb_000853_330 Hb_001059_060--Hb_004052_110 Hb_011188_010 Hb_011188_010 Hb_001059_060--Hb_011188_010 Hb_002259_220 Hb_002259_220 Hb_004052_110--Hb_002259_220 Hb_001865_100 Hb_001865_100 Hb_004052_110--Hb_001865_100 Hb_000979_140 Hb_000979_140 Hb_004052_110--Hb_000979_140 Hb_004052_110--Hb_011188_010 Hb_009078_020--Hb_011188_010 Hb_002809_160 Hb_002809_160 Hb_009078_020--Hb_002809_160 Hb_001408_020 Hb_001408_020 Hb_009078_020--Hb_001408_020 Hb_009078_020--Hb_000853_330 Hb_000300_030--Hb_003661_010 Hb_005305_100 Hb_005305_100 Hb_000300_030--Hb_005305_100 Hb_001541_150 Hb_001541_150 Hb_000300_030--Hb_001541_150 Hb_011457_140 Hb_011457_140 Hb_000300_030--Hb_011457_140 Hb_000358_220 Hb_000358_220 Hb_000300_030--Hb_000358_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8194 38.8209 38.081 37.5307 12.0026 10.5881
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.20919 9.32254 5.88073 21.2313 46.4022

CAGE analysis