Hb_001998_240

Information

Type -
Description -
Location Contig1998: 267006-267878
Sequence    

Annotation

kegg
ID pop:POPTR_0001s43060g
description hypothetical protein
nr
ID XP_012075536.1
description PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
swissprot
ID Q9N1Q0
description Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii GN=SNRPB PE=2 SV=1
trembl
ID A0A067KSP7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09152 PE=4 SV=1
Gene Ontology
ID GO:0005634
description small nuclear ribonucleoprotein-associated protein b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20020: 266892-272715
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001998_240 0.0 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
2 Hb_002053_150 0.0556229039 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
3 Hb_006816_280 0.0648353983 - - PREDICTED: uncharacterized protein LOC105647448 isoform X2 [Jatropha curcas]
4 Hb_004787_050 0.0654696054 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
5 Hb_003058_260 0.066562022 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
6 Hb_003943_110 0.0677526209 transcription factor TF Family: MYB-related Zuotin, putative [Ricinus communis]
7 Hb_002675_130 0.0747859675 - - PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit isoform X1 [Jatropha curcas]
8 Hb_003228_110 0.0784543409 - - PREDICTED: uncharacterized protein LOC105637245 [Jatropha curcas]
9 Hb_027472_070 0.0825790492 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
10 Hb_001157_240 0.0833340475 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
11 Hb_003411_040 0.0840278988 - - unnamed protein product [Coffea canephora]
12 Hb_002539_070 0.0841452643 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
13 Hb_001009_280 0.0848259361 - - PREDICTED: telomere length regulation protein TEL2 homolog [Jatropha curcas]
14 Hb_002411_110 0.0851579956 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
15 Hb_009911_030 0.0853479295 transcription factor TF Family: FAR1 far-red impaired response 1 -like protein [Gossypium arboreum]
16 Hb_002890_130 0.0854410151 - - tip120, putative [Ricinus communis]
17 Hb_012632_010 0.0858230153 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]
18 Hb_008959_010 0.0863580888 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000473_110 0.0865695066 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
20 Hb_001105_020 0.0868053326 - - expressed protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001998_240 Hb_001998_240 Hb_002053_150 Hb_002053_150 Hb_001998_240--Hb_002053_150 Hb_006816_280 Hb_006816_280 Hb_001998_240--Hb_006816_280 Hb_004787_050 Hb_004787_050 Hb_001998_240--Hb_004787_050 Hb_003058_260 Hb_003058_260 Hb_001998_240--Hb_003058_260 Hb_003943_110 Hb_003943_110 Hb_001998_240--Hb_003943_110 Hb_002675_130 Hb_002675_130 Hb_001998_240--Hb_002675_130 Hb_002053_150--Hb_006816_280 Hb_003228_110 Hb_003228_110 Hb_002053_150--Hb_003228_110 Hb_003411_040 Hb_003411_040 Hb_002053_150--Hb_003411_040 Hb_003494_230 Hb_003494_230 Hb_002053_150--Hb_003494_230 Hb_001541_290 Hb_001541_290 Hb_002053_150--Hb_001541_290 Hb_027472_070 Hb_027472_070 Hb_006816_280--Hb_027472_070 Hb_001105_020 Hb_001105_020 Hb_006816_280--Hb_001105_020 Hb_000261_480 Hb_000261_480 Hb_006816_280--Hb_000261_480 Hb_004208_050 Hb_004208_050 Hb_006816_280--Hb_004208_050 Hb_004787_050--Hb_003058_260 Hb_004787_050--Hb_002675_130 Hb_007894_110 Hb_007894_110 Hb_004787_050--Hb_007894_110 Hb_004787_050--Hb_003943_110 Hb_001635_120 Hb_001635_120 Hb_004787_050--Hb_001635_120 Hb_012632_010 Hb_012632_010 Hb_003058_260--Hb_012632_010 Hb_002071_070 Hb_002071_070 Hb_003058_260--Hb_002071_070 Hb_000856_040 Hb_000856_040 Hb_003058_260--Hb_000856_040 Hb_000313_120 Hb_000313_120 Hb_003058_260--Hb_000313_120 Hb_001157_240 Hb_001157_240 Hb_003943_110--Hb_001157_240 Hb_001716_040 Hb_001716_040 Hb_003943_110--Hb_001716_040 Hb_005582_040 Hb_005582_040 Hb_003943_110--Hb_005582_040 Hb_027073_020 Hb_027073_020 Hb_003943_110--Hb_027073_020 Hb_008033_040 Hb_008033_040 Hb_003943_110--Hb_008033_040 Hb_002234_090 Hb_002234_090 Hb_002675_130--Hb_002234_090 Hb_022256_020 Hb_022256_020 Hb_002675_130--Hb_022256_020 Hb_004916_010 Hb_004916_010 Hb_002675_130--Hb_004916_010 Hb_011618_070 Hb_011618_070 Hb_002675_130--Hb_011618_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9648 16.5825 15.5963 11.3995 12.8069 11.8504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.58492 12.5447 19.0669 20.8457 18.3947

CAGE analysis