Hb_001998_260

Information

Type -
Description -
Location Contig1998: 276279-284726
Sequence    

Annotation

kegg
ID rcu:RCOM_0771070
description cytochrome P450, putative (EC:1.14.13.77)
nr
ID XP_002529895.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID I7C6E8
description Beta-amyrin 28-oxidase OS=Panax ginseng PE=2 SV=1
trembl
ID B9SV76
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_0771070 PE=3 SV=1
Gene Ontology
ID GO:0005506
description beta-amyrin 28-oxidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001998_260 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_001799_090 0.0864347314 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
3 Hb_028008_030 0.0942933851 - - probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor [Malus domestica]
4 Hb_005144_100 0.1037430471 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
5 Hb_003266_060 0.1074838644 - - PREDICTED: basic 7S globulin-like [Populus euphratica]
6 Hb_002289_110 0.1106472447 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
7 Hb_039496_010 0.1170367963 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
8 Hb_001856_160 0.1237063847 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000230_160 0.1255736778 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
10 Hb_006395_010 0.1259715099 - - hypothetical protein RCOM_0725500 [Ricinus communis]
11 Hb_001006_030 0.1277975504 - - conserved hypothetical protein [Ricinus communis]
12 Hb_008001_020 0.1289193891 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
13 Hb_003805_080 0.129972761 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
14 Hb_008705_040 0.1352974815 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
15 Hb_006314_020 0.1356362644 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
16 Hb_000069_520 0.1374277945 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
17 Hb_003967_010 0.1375731311 - - cytochrome P450, putative [Ricinus communis]
18 Hb_000586_100 0.1376624775 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003787_060 0.1379409049 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
20 Hb_001821_030 0.1380021161 - - hypothetical protein JCGZ_13357 [Jatropha curcas]

Gene co-expression network

sample Hb_001998_260 Hb_001998_260 Hb_001799_090 Hb_001799_090 Hb_001998_260--Hb_001799_090 Hb_028008_030 Hb_028008_030 Hb_001998_260--Hb_028008_030 Hb_005144_100 Hb_005144_100 Hb_001998_260--Hb_005144_100 Hb_003266_060 Hb_003266_060 Hb_001998_260--Hb_003266_060 Hb_002289_110 Hb_002289_110 Hb_001998_260--Hb_002289_110 Hb_039496_010 Hb_039496_010 Hb_001998_260--Hb_039496_010 Hb_001799_090--Hb_002289_110 Hb_001856_160 Hb_001856_160 Hb_001799_090--Hb_001856_160 Hb_001799_090--Hb_028008_030 Hb_000069_520 Hb_000069_520 Hb_001799_090--Hb_000069_520 Hb_005489_120 Hb_005489_120 Hb_001799_090--Hb_005489_120 Hb_003805_080 Hb_003805_080 Hb_028008_030--Hb_003805_080 Hb_000230_160 Hb_000230_160 Hb_028008_030--Hb_000230_160 Hb_028008_030--Hb_039496_010 Hb_003967_010 Hb_003967_010 Hb_028008_030--Hb_003967_010 Hb_002217_210 Hb_002217_210 Hb_005144_100--Hb_002217_210 Hb_005144_100--Hb_003266_060 Hb_008959_050 Hb_008959_050 Hb_005144_100--Hb_008959_050 Hb_004635_040 Hb_004635_040 Hb_005144_100--Hb_004635_040 Hb_005144_100--Hb_001799_090 Hb_000676_170 Hb_000676_170 Hb_003266_060--Hb_000676_170 Hb_001006_030 Hb_001006_030 Hb_003266_060--Hb_001006_030 Hb_003266_060--Hb_000069_520 Hb_000417_350 Hb_000417_350 Hb_003266_060--Hb_000417_350 Hb_005237_070 Hb_005237_070 Hb_002289_110--Hb_005237_070 Hb_002289_110--Hb_001856_160 Hb_029866_080 Hb_029866_080 Hb_002289_110--Hb_029866_080 Hb_002289_110--Hb_028008_030 Hb_003787_060 Hb_003787_060 Hb_039496_010--Hb_003787_060 Hb_039496_010--Hb_003805_080 Hb_000934_290 Hb_000934_290 Hb_039496_010--Hb_000934_290 Hb_000963_010 Hb_000963_010 Hb_039496_010--Hb_000963_010 Hb_003788_010 Hb_003788_010 Hb_039496_010--Hb_003788_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.5205 0.140671 0.948419 0 0.012946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.974033 0.0544317

CAGE analysis