Hb_001999_070

Information

Type -
Description -
Location Contig1999: 111735-113138
Sequence    

Annotation

kegg
ID rcu:RCOM_0612070
description ammonium transporter, putative
nr
ID XP_012067687.1
description PREDICTED: ammonium transporter 1 member 3 [Jatropha curcas]
swissprot
ID Q9FVN0
description Ammonium transporter 1 member 3 OS=Solanum lycopersicum GN=AMT1-3 PE=2 SV=1
trembl
ID A0A067LNR0
description Ammonium transporter OS=Jatropha curcas GN=JCGZ_08477 PE=3 SV=1
Gene Ontology
ID GO:0016021
description ammonium transporter 1 member 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001999_070 0.0 - - PREDICTED: ammonium transporter 1 member 3 [Jatropha curcas]
2 Hb_003018_150 0.1075216761 - - PREDICTED: uncharacterized protein LOC105628869 [Jatropha curcas]
3 Hb_001210_060 0.1085340237 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
4 Hb_000847_030 0.113256493 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
5 Hb_000076_060 0.1134514035 - - hypothetical protein RCOM_0586940 [Ricinus communis]
6 Hb_003195_080 0.1147728842 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]
7 Hb_003058_170 0.119987025 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
8 Hb_003835_080 0.1222276457 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
9 Hb_003849_070 0.1223604775 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
10 Hb_000984_160 0.1282622464 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
11 Hb_005569_010 0.1288009191 - - Heme-binding protein, putative [Ricinus communis]
12 Hb_001278_020 0.1297683631 - - sucrose synthase 6 [Hevea brasiliensis]
13 Hb_000008_070 0.1301576976 - - kinase, putative [Ricinus communis]
14 Hb_022693_010 0.1308841579 - - pectin acetylesterase, putative [Ricinus communis]
15 Hb_001296_060 0.1328440491 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
16 Hb_002246_030 0.1338759993 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
17 Hb_000424_140 0.1344591667 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
18 Hb_001541_200 0.1356855348 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
19 Hb_004052_030 0.1359059892 - - PREDICTED: uncharacterized protein LOC105640637 [Jatropha curcas]
20 Hb_000608_190 0.1379007338 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase PREDICTED: isopentenyl-diphosphate Delta-isomerase I [Jatropha curcas]

Gene co-expression network

sample Hb_001999_070 Hb_001999_070 Hb_003018_150 Hb_003018_150 Hb_001999_070--Hb_003018_150 Hb_001210_060 Hb_001210_060 Hb_001999_070--Hb_001210_060 Hb_000847_030 Hb_000847_030 Hb_001999_070--Hb_000847_030 Hb_000076_060 Hb_000076_060 Hb_001999_070--Hb_000076_060 Hb_003195_080 Hb_003195_080 Hb_001999_070--Hb_003195_080 Hb_003058_170 Hb_003058_170 Hb_001999_070--Hb_003058_170 Hb_003018_150--Hb_000847_030 Hb_005914_160 Hb_005914_160 Hb_003018_150--Hb_005914_160 Hb_003018_150--Hb_001210_060 Hb_003018_150--Hb_003058_170 Hb_020141_030 Hb_020141_030 Hb_003018_150--Hb_020141_030 Hb_000618_110 Hb_000618_110 Hb_003018_150--Hb_000618_110 Hb_001210_060--Hb_000847_030 Hb_002246_030 Hb_002246_030 Hb_001210_060--Hb_002246_030 Hb_000329_440 Hb_000329_440 Hb_001210_060--Hb_000329_440 Hb_027472_060 Hb_027472_060 Hb_001210_060--Hb_027472_060 Hb_000103_130 Hb_000103_130 Hb_001210_060--Hb_000103_130 Hb_005694_120 Hb_005694_120 Hb_000847_030--Hb_005694_120 Hb_000847_030--Hb_000618_110 Hb_000984_160 Hb_000984_160 Hb_000847_030--Hb_000984_160 Hb_001946_120 Hb_001946_120 Hb_000847_030--Hb_001946_120 Hb_000076_060--Hb_003058_170 Hb_005569_010 Hb_005569_010 Hb_000076_060--Hb_005569_010 Hb_001098_040 Hb_001098_040 Hb_000076_060--Hb_001098_040 Hb_000665_210 Hb_000665_210 Hb_000076_060--Hb_000665_210 Hb_000977_020 Hb_000977_020 Hb_000076_060--Hb_000977_020 Hb_009421_070 Hb_009421_070 Hb_000076_060--Hb_009421_070 Hb_003195_080--Hb_005569_010 Hb_004835_020 Hb_004835_020 Hb_003195_080--Hb_004835_020 Hb_003195_080--Hb_000984_160 Hb_000424_140 Hb_000424_140 Hb_003195_080--Hb_000424_140 Hb_016924_010 Hb_016924_010 Hb_003195_080--Hb_016924_010 Hb_004052_030 Hb_004052_030 Hb_003195_080--Hb_004052_030 Hb_002713_060 Hb_002713_060 Hb_003058_170--Hb_002713_060 Hb_003058_170--Hb_001210_060 Hb_003058_170--Hb_000847_030 Hb_029223_010 Hb_029223_010 Hb_003058_170--Hb_029223_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0811647 0.252817 0.950171 1.50383 0 0.0149967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.067426 0.0265219 0 0.222528 2.43432

CAGE analysis