Hb_001999_080

Information

Type -
Description -
Location Contig1999: 113859-123658
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04950g
description POPTRDRAFT_723083; hypothetical protein
nr
ID AIU41589.1
description CCCH-type zinc finger protein [Hevea brasiliensis]
swissprot
ID Q9SD61
description Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis thaliana GN=At3g47120 PE=2 SV=1
trembl
ID A0A097P9K2
description CCCH-type zinc finger protein OS=Hevea brasiliensis GN=CZF1 PE=2 SV=1
Gene Ontology
ID GO:0097159
description zinc finger ccch domain-containing protein 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001999_080 0.0 - - CCCH-type zinc finger protein [Hevea brasiliensis]
2 Hb_000573_060 0.1646294756 - - PREDICTED: eukaryotic translation initiation factor 2D isoform X1 [Jatropha curcas]
3 Hb_000069_320 0.1710116631 - - PREDICTED: uncharacterized protein LOC105642846 [Jatropha curcas]
4 Hb_000343_110 0.1749084389 - - Heat shock 70 kDa protein, putative [Ricinus communis]
5 Hb_000032_470 0.1789851772 - - PREDICTED: uncharacterized protein LOC103415826 [Malus domestica]
6 Hb_006618_040 0.1817701709 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
7 Hb_001232_100 0.1830394146 - - Heat shock 70 kDa protein, putative [Ricinus communis]
8 Hb_000101_350 0.1834081854 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance protein, putative [Theobroma cacao]
9 Hb_128743_010 0.1852492518 - - RNA-binding protein, putative [Ricinus communis]
10 Hb_001440_040 0.1878741609 - - hypothetical protein POPTR_0008s03520g [Populus trichocarpa]
11 Hb_004336_040 0.1878766881 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
12 Hb_000260_560 0.1887726306 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Jatropha curcas]
13 Hb_000115_160 0.1897673529 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
14 Hb_005488_150 0.1906296054 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000286_170 0.190935786 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
16 Hb_048476_170 0.1922850239 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Citrus sinensis]
17 Hb_002890_180 0.1926445295 - - PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 [Jatropha curcas]
18 Hb_120470_010 0.1947063338 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
19 Hb_000005_070 0.1955602319 transcription factor TF Family: PHD protein binding protein, putative [Ricinus communis]
20 Hb_003805_050 0.1956214845 - - -

Gene co-expression network

sample Hb_001999_080 Hb_001999_080 Hb_000573_060 Hb_000573_060 Hb_001999_080--Hb_000573_060 Hb_000069_320 Hb_000069_320 Hb_001999_080--Hb_000069_320 Hb_000343_110 Hb_000343_110 Hb_001999_080--Hb_000343_110 Hb_000032_470 Hb_000032_470 Hb_001999_080--Hb_000032_470 Hb_006618_040 Hb_006618_040 Hb_001999_080--Hb_006618_040 Hb_001232_100 Hb_001232_100 Hb_001999_080--Hb_001232_100 Hb_002641_130 Hb_002641_130 Hb_000573_060--Hb_002641_130 Hb_001244_150 Hb_001244_150 Hb_000573_060--Hb_001244_150 Hb_000086_150 Hb_000086_150 Hb_000573_060--Hb_000086_150 Hb_000260_560 Hb_000260_560 Hb_000573_060--Hb_000260_560 Hb_009486_080 Hb_009486_080 Hb_000573_060--Hb_009486_080 Hb_001001_150 Hb_001001_150 Hb_000573_060--Hb_001001_150 Hb_005488_150 Hb_005488_150 Hb_000069_320--Hb_005488_150 Hb_000041_090 Hb_000041_090 Hb_000069_320--Hb_000041_090 Hb_148909_030 Hb_148909_030 Hb_000069_320--Hb_148909_030 Hb_000406_020 Hb_000406_020 Hb_000069_320--Hb_000406_020 Hb_006295_020 Hb_006295_020 Hb_000069_320--Hb_006295_020 Hb_001440_040 Hb_001440_040 Hb_000069_320--Hb_001440_040 Hb_011344_020 Hb_011344_020 Hb_000343_110--Hb_011344_020 Hb_000343_110--Hb_000573_060 Hb_002044_170 Hb_002044_170 Hb_000343_110--Hb_002044_170 Hb_128743_010 Hb_128743_010 Hb_000343_110--Hb_128743_010 Hb_158604_010 Hb_158604_010 Hb_000343_110--Hb_158604_010 Hb_032920_130 Hb_032920_130 Hb_000343_110--Hb_032920_130 Hb_002233_100 Hb_002233_100 Hb_000032_470--Hb_002233_100 Hb_064903_010 Hb_064903_010 Hb_000032_470--Hb_064903_010 Hb_000032_470--Hb_001440_040 Hb_048476_170 Hb_048476_170 Hb_000032_470--Hb_048476_170 Hb_014267_010 Hb_014267_010 Hb_000032_470--Hb_014267_010 Hb_000832_130 Hb_000832_130 Hb_000032_470--Hb_000832_130 Hb_006618_040--Hb_001232_100 Hb_000334_170 Hb_000334_170 Hb_006618_040--Hb_000334_170 Hb_006618_040--Hb_000343_110 Hb_000941_140 Hb_000941_140 Hb_006618_040--Hb_000941_140 Hb_002400_230 Hb_002400_230 Hb_006618_040--Hb_002400_230 Hb_004296_010 Hb_004296_010 Hb_006618_040--Hb_004296_010 Hb_001232_100--Hb_000260_560 Hb_001232_100--Hb_000334_170 Hb_001232_100--Hb_000573_060 Hb_006052_030 Hb_006052_030 Hb_001232_100--Hb_006052_030 Hb_000329_100 Hb_000329_100 Hb_001232_100--Hb_000329_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.376291 3.13091 1.60446 0.323458 4.54079 2.23927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.566292 0.922729 1.42075 1.72064 2.30505

CAGE analysis