Hb_001999_090

Information

Type -
Description -
Location Contig1999: 125104-130727
Sequence    

Annotation

kegg
ID fve:101300709
description pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like
nr
ID XP_012067781.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]
swissprot
ID O82380
description Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1
trembl
ID A0A067LNR5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08482 PE=4 SV=1
Gene Ontology
ID GO:0031425
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20027: 125273-125778 , PASA_asmbl_20030: 130215-130362 , PASA_asmbl_20031: 131407-133151
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001999_090 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]
2 Hb_002235_040 0.0506791644 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
3 Hb_004712_130 0.0634231432 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
4 Hb_006718_020 0.0707356318 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
5 Hb_007441_220 0.0718028514 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
6 Hb_002316_160 0.0771810899 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
7 Hb_027472_070 0.0800940868 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
8 Hb_000964_130 0.0816035087 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
9 Hb_000497_300 0.0833238 - - peroxisomal membrane protein [Hevea brasiliensis]
10 Hb_002316_150 0.0839746766 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
11 Hb_001865_070 0.0851310656 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
12 Hb_000130_490 0.0902247383 - - PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
13 Hb_010344_050 0.0930865007 - - Adagio 1 -like protein [Gossypium arboreum]
14 Hb_000172_110 0.0946542625 - - -
15 Hb_000366_040 0.0958454415 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
16 Hb_002063_020 0.0961618872 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
17 Hb_000041_100 0.0963745188 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
18 Hb_012725_060 0.0964623066 - - protein binding protein, putative [Ricinus communis]
19 Hb_001242_130 0.0976141728 - - PREDICTED: U3 small nucleolar RNA-associated protein 4-like [Jatropha curcas]
20 Hb_000270_670 0.0980930535 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]

Gene co-expression network

sample Hb_001999_090 Hb_001999_090 Hb_002235_040 Hb_002235_040 Hb_001999_090--Hb_002235_040 Hb_004712_130 Hb_004712_130 Hb_001999_090--Hb_004712_130 Hb_006718_020 Hb_006718_020 Hb_001999_090--Hb_006718_020 Hb_007441_220 Hb_007441_220 Hb_001999_090--Hb_007441_220 Hb_002316_160 Hb_002316_160 Hb_001999_090--Hb_002316_160 Hb_027472_070 Hb_027472_070 Hb_001999_090--Hb_027472_070 Hb_002235_040--Hb_007441_220 Hb_002316_150 Hb_002316_150 Hb_002235_040--Hb_002316_150 Hb_000417_200 Hb_000417_200 Hb_002235_040--Hb_000417_200 Hb_002235_040--Hb_002316_160 Hb_012725_060 Hb_012725_060 Hb_002235_040--Hb_012725_060 Hb_000497_300 Hb_000497_300 Hb_004712_130--Hb_000497_300 Hb_010344_050 Hb_010344_050 Hb_004712_130--Hb_010344_050 Hb_004712_130--Hb_027472_070 Hb_000094_070 Hb_000094_070 Hb_004712_130--Hb_000094_070 Hb_000366_040 Hb_000366_040 Hb_004712_130--Hb_000366_040 Hb_006718_020--Hb_002316_150 Hb_000270_670 Hb_000270_670 Hb_006718_020--Hb_000270_670 Hb_006718_020--Hb_002316_160 Hb_000130_490 Hb_000130_490 Hb_006718_020--Hb_000130_490 Hb_006718_020--Hb_007441_220 Hb_000041_100 Hb_000041_100 Hb_007441_220--Hb_000041_100 Hb_007441_220--Hb_002316_150 Hb_001085_060 Hb_001085_060 Hb_007441_220--Hb_001085_060 Hb_007441_220--Hb_000270_670 Hb_000245_040 Hb_000245_040 Hb_007441_220--Hb_000245_040 Hb_002316_160--Hb_000130_490 Hb_005486_030 Hb_005486_030 Hb_002316_160--Hb_005486_030 Hb_009898_010 Hb_009898_010 Hb_002316_160--Hb_009898_010 Hb_001865_070 Hb_001865_070 Hb_002316_160--Hb_001865_070 Hb_027472_070--Hb_012725_060 Hb_006816_280 Hb_006816_280 Hb_027472_070--Hb_006816_280 Hb_001242_130 Hb_001242_130 Hb_027472_070--Hb_001242_130 Hb_004787_050 Hb_004787_050 Hb_027472_070--Hb_004787_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.02455 3.01673 0.994545 1.95514 1.54468 1.64547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.73 2.06975 4.55428 2.7213 3.47323

CAGE analysis