Hb_001999_170

Information

Type -
Description -
Location Contig1999: 170462-173477
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04880g
description POPTRDRAFT_723097; hypothetical protein
nr
ID XP_012067872.1
description PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LDN1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08489 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20037: 170398-173227 , PASA_asmbl_20038: 170675-170936
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001999_170 0.0 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
2 Hb_001310_010 0.0813485059 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type [Jatropha curcas]
3 Hb_010964_010 0.1011333895 - - -
4 Hb_000336_060 0.1051330739 - - hypothetical protein JCGZ_26632 [Jatropha curcas]
5 Hb_010126_030 0.1072608307 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
6 Hb_005054_330 0.1082356122 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
7 Hb_007858_020 0.1140765928 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
8 Hb_000808_090 0.1171627594 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
9 Hb_004612_020 0.1192106251 - - PREDICTED: tetraspanin-8-like [Populus euphratica]
10 Hb_124677_020 0.1214605345 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
11 Hb_022137_020 0.1225052329 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
12 Hb_120011_010 0.1249830079 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
13 Hb_000627_130 0.1264241765 - - Polcalcin Jun o, putative [Ricinus communis]
14 Hb_004899_010 0.1293404118 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
15 Hb_002960_100 0.132447173 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
16 Hb_000164_160 0.1326469341 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
17 Hb_000045_140 0.1329863501 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
18 Hb_167186_010 0.1330946769 - - cation-transporting atpase plant, putative [Ricinus communis]
19 Hb_000959_240 0.1368830373 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
20 Hb_109591_010 0.1384447238 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]

Gene co-expression network

sample Hb_001999_170 Hb_001999_170 Hb_001310_010 Hb_001310_010 Hb_001999_170--Hb_001310_010 Hb_010964_010 Hb_010964_010 Hb_001999_170--Hb_010964_010 Hb_000336_060 Hb_000336_060 Hb_001999_170--Hb_000336_060 Hb_010126_030 Hb_010126_030 Hb_001999_170--Hb_010126_030 Hb_005054_330 Hb_005054_330 Hb_001999_170--Hb_005054_330 Hb_007858_020 Hb_007858_020 Hb_001999_170--Hb_007858_020 Hb_120011_010 Hb_120011_010 Hb_001310_010--Hb_120011_010 Hb_002960_100 Hb_002960_100 Hb_001310_010--Hb_002960_100 Hb_004612_020 Hb_004612_020 Hb_001310_010--Hb_004612_020 Hb_164146_020 Hb_164146_020 Hb_001310_010--Hb_164146_020 Hb_001310_010--Hb_010964_010 Hb_010964_010--Hb_007858_020 Hb_000808_090 Hb_000808_090 Hb_010964_010--Hb_000808_090 Hb_000627_130 Hb_000627_130 Hb_010964_010--Hb_000627_130 Hb_001619_140 Hb_001619_140 Hb_010964_010--Hb_001619_140 Hb_124677_020 Hb_124677_020 Hb_000336_060--Hb_124677_020 Hb_000336_060--Hb_010126_030 Hb_000283_100 Hb_000283_100 Hb_000336_060--Hb_000283_100 Hb_000984_290 Hb_000984_290 Hb_000336_060--Hb_000984_290 Hb_022137_020 Hb_022137_020 Hb_000336_060--Hb_022137_020 Hb_010126_030--Hb_000283_100 Hb_001989_060 Hb_001989_060 Hb_010126_030--Hb_001989_060 Hb_004586_130 Hb_004586_130 Hb_010126_030--Hb_004586_130 Hb_061908_030 Hb_061908_030 Hb_010126_030--Hb_061908_030 Hb_000680_180 Hb_000680_180 Hb_010126_030--Hb_000680_180 Hb_005054_330--Hb_007858_020 Hb_167186_010 Hb_167186_010 Hb_005054_330--Hb_167186_010 Hb_000959_240 Hb_000959_240 Hb_005054_330--Hb_000959_240 Hb_008725_220 Hb_008725_220 Hb_005054_330--Hb_008725_220 Hb_000164_160 Hb_000164_160 Hb_005054_330--Hb_000164_160 Hb_003207_230 Hb_003207_230 Hb_005054_330--Hb_003207_230 Hb_004032_220 Hb_004032_220 Hb_007858_020--Hb_004032_220 Hb_124953_010 Hb_124953_010 Hb_007858_020--Hb_124953_010 Hb_007858_020--Hb_000959_240 Hb_000032_150 Hb_000032_150 Hb_007858_020--Hb_000032_150 Hb_007858_020--Hb_167186_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.38504 156.056 103.815 32.4741 0.835331 1.816
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.75553 2.96 0.937201 3.13832 6.61608

CAGE analysis