Hb_001999_190

Information

Type -
Description -
Location Contig1999: 182242-184189
Sequence    

Annotation

kegg
ID rcu:RCOM_0611560
description GDP-mannose transporter, putative
nr
ID XP_002525612.1
description GDP-mannose transporter, putative [Ricinus communis]
swissprot
ID Q84L09
description GDP-mannose transporter GONST2 OS=Arabidopsis thaliana GN=GONST2 PE=2 SV=1
trembl
ID B9SHZ3
description GDP-mannose transporter, putative OS=Ricinus communis GN=RCOM_0611560 PE=4 SV=1
Gene Ontology
ID GO:0044765
description gdp-mannose transporter gonst2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001999_190 0.0 - - GDP-mannose transporter, putative [Ricinus communis]
2 Hb_008983_060 0.1503081763 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance protein, putative [Theobroma cacao]
3 Hb_001491_060 0.2061081434 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like isoform X1 [Populus euphratica]
4 Hb_184705_010 0.2419780239 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
5 Hb_000107_320 0.2574886754 - - hypothetical protein POPTR_0004s21930g [Populus trichocarpa]
6 Hb_001148_020 0.2656833119 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
7 Hb_005975_020 0.2780421774 - - -
8 Hb_015388_030 0.2897925551 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_000908_010 0.3092637071 - - Disease resistance protein RGA2, putative [Ricinus communis]
10 Hb_000017_150 0.3099286491 - - hypothetical protein POPTR_0001s09780g [Populus trichocarpa]
11 Hb_004330_030 0.3184719218 - - -
12 Hb_121304_020 0.3279202596 - - -
13 Hb_003384_070 0.3332738908 - - PREDICTED: methylesterase 17-like [Populus euphratica]
14 Hb_137914_010 0.3449134775 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
15 Hb_005608_010 0.3449498068 - - PREDICTED: U-box domain-containing protein 40 [Jatropha curcas]
16 Hb_010398_010 0.3454532911 - - PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 15a-like [Malus domestica]
17 Hb_000061_380 0.3473327706 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003096_040 0.3537747037 transcription factor TF Family: HB hypothetical protein POPTR_0005s07290g [Populus trichocarpa]
19 Hb_000905_150 0.3541773216 - - Cytochrome P450 [Theobroma cacao]
20 Hb_031527_070 0.3543066026 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]

Gene co-expression network

sample Hb_001999_190 Hb_001999_190 Hb_008983_060 Hb_008983_060 Hb_001999_190--Hb_008983_060 Hb_001491_060 Hb_001491_060 Hb_001999_190--Hb_001491_060 Hb_184705_010 Hb_184705_010 Hb_001999_190--Hb_184705_010 Hb_000107_320 Hb_000107_320 Hb_001999_190--Hb_000107_320 Hb_001148_020 Hb_001148_020 Hb_001999_190--Hb_001148_020 Hb_005975_020 Hb_005975_020 Hb_001999_190--Hb_005975_020 Hb_008983_060--Hb_184705_010 Hb_000908_010 Hb_000908_010 Hb_008983_060--Hb_000908_010 Hb_008983_060--Hb_001148_020 Hb_008983_060--Hb_001491_060 Hb_000061_380 Hb_000061_380 Hb_008983_060--Hb_000061_380 Hb_137914_010 Hb_137914_010 Hb_001491_060--Hb_137914_010 Hb_002542_120 Hb_002542_120 Hb_001491_060--Hb_002542_120 Hb_002588_020 Hb_002588_020 Hb_001491_060--Hb_002588_020 Hb_003581_160 Hb_003581_160 Hb_001491_060--Hb_003581_160 Hb_001491_060--Hb_001148_020 Hb_003384_070 Hb_003384_070 Hb_184705_010--Hb_003384_070 Hb_011382_050 Hb_011382_050 Hb_184705_010--Hb_011382_050 Hb_000017_150 Hb_000017_150 Hb_184705_010--Hb_000017_150 Hb_000315_030 Hb_000315_030 Hb_184705_010--Hb_000315_030 Hb_000107_320--Hb_005975_020 Hb_000107_320--Hb_000908_010 Hb_009012_010 Hb_009012_010 Hb_000107_320--Hb_009012_010 Hb_015388_030 Hb_015388_030 Hb_000107_320--Hb_015388_030 Hb_012753_080 Hb_012753_080 Hb_000107_320--Hb_012753_080 Hb_121304_020 Hb_121304_020 Hb_001148_020--Hb_121304_020 Hb_001148_020--Hb_184705_010 Hb_001148_020--Hb_000017_150 Hb_060237_020 Hb_060237_020 Hb_001148_020--Hb_060237_020 Hb_008864_040 Hb_008864_040 Hb_001148_020--Hb_008864_040 Hb_004899_280 Hb_004899_280 Hb_005975_020--Hb_004899_280 Hb_003362_060 Hb_003362_060 Hb_005975_020--Hb_003362_060 Hb_131949_010 Hb_131949_010 Hb_005975_020--Hb_131949_010 Hb_000171_040 Hb_000171_040 Hb_005975_020--Hb_000171_040 Hb_184798_040 Hb_184798_040 Hb_005975_020--Hb_184798_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0944934 0.105887 0 0.0444903 0.120223 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0933071 0

CAGE analysis