Hb_001999_200

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1999: 185921-187054
Sequence    

Annotation

kegg
ID rcu:RCOM_0611540
description hypothetical protein
nr
ID XP_002525610.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SHZ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0611540 PE=4 SV=1
Gene Ontology
ID GO:0031225
description zinc finger family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001999_200 0.0 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
2 Hb_002598_040 0.102134694 - - hypothetical protein OsI_22030 [Oryza sativa Indica Group]
3 Hb_000479_060 0.1197483645 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
4 Hb_002762_100 0.1221255374 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000403_100 0.1267286715 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
6 Hb_017700_030 0.1297533894 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
7 Hb_001675_310 0.1327551019 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
8 Hb_114733_010 0.1336553937 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
9 Hb_000384_020 0.1348542892 - - sucrose phosphate syntase, putative [Ricinus communis]
10 Hb_000666_120 0.1374316083 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
11 Hb_000991_080 0.1394502458 - - kinase, putative [Ricinus communis]
12 Hb_007292_050 0.1400107973 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
13 Hb_001675_290 0.1406294973 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
14 Hb_000638_180 0.1418882398 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
15 Hb_173107_020 0.145944288 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
16 Hb_000816_150 0.1462836115 - - oligopeptide transporter, putative [Ricinus communis]
17 Hb_081864_010 0.1487505985 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_000365_280 0.1492740802 - - calcium binding protein/cast, putative [Ricinus communis]
19 Hb_010174_200 0.1500965861 - - PREDICTED: uncharacterized protein LOC105644743 isoform X1 [Jatropha curcas]
20 Hb_004297_080 0.1509643158 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]

Gene co-expression network

sample Hb_001999_200 Hb_001999_200 Hb_002598_040 Hb_002598_040 Hb_001999_200--Hb_002598_040 Hb_000479_060 Hb_000479_060 Hb_001999_200--Hb_000479_060 Hb_002762_100 Hb_002762_100 Hb_001999_200--Hb_002762_100 Hb_000403_100 Hb_000403_100 Hb_001999_200--Hb_000403_100 Hb_017700_030 Hb_017700_030 Hb_001999_200--Hb_017700_030 Hb_001675_310 Hb_001675_310 Hb_001999_200--Hb_001675_310 Hb_002598_040--Hb_017700_030 Hb_002598_040--Hb_000403_100 Hb_068804_180 Hb_068804_180 Hb_002598_040--Hb_068804_180 Hb_114733_010 Hb_114733_010 Hb_002598_040--Hb_114733_010 Hb_000816_150 Hb_000816_150 Hb_002598_040--Hb_000816_150 Hb_000365_280 Hb_000365_280 Hb_000479_060--Hb_000365_280 Hb_000109_190 Hb_000109_190 Hb_000479_060--Hb_000109_190 Hb_005539_140 Hb_005539_140 Hb_000479_060--Hb_005539_140 Hb_002973_030 Hb_002973_030 Hb_000479_060--Hb_002973_030 Hb_081864_010 Hb_081864_010 Hb_000479_060--Hb_081864_010 Hb_103225_030 Hb_103225_030 Hb_002762_100--Hb_103225_030 Hb_005741_030 Hb_005741_030 Hb_002762_100--Hb_005741_030 Hb_000849_030 Hb_000849_030 Hb_002762_100--Hb_000849_030 Hb_002890_330 Hb_002890_330 Hb_002762_100--Hb_002890_330 Hb_002762_100--Hb_081864_010 Hb_000020_210 Hb_000020_210 Hb_002762_100--Hb_000020_210 Hb_000403_100--Hb_017700_030 Hb_002035_130 Hb_002035_130 Hb_000403_100--Hb_002035_130 Hb_005396_030 Hb_005396_030 Hb_000403_100--Hb_005396_030 Hb_000403_100--Hb_114733_010 Hb_017700_030--Hb_000816_150 Hb_017700_030--Hb_114733_010 Hb_000384_020 Hb_000384_020 Hb_017700_030--Hb_000384_020 Hb_003582_030 Hb_003582_030 Hb_017700_030--Hb_003582_030 Hb_000210_160 Hb_000210_160 Hb_001675_310--Hb_000210_160 Hb_003849_200 Hb_003849_200 Hb_001675_310--Hb_003849_200 Hb_000563_630 Hb_000563_630 Hb_001675_310--Hb_000563_630 Hb_002233_080 Hb_002233_080 Hb_001675_310--Hb_002233_080 Hb_000666_120 Hb_000666_120 Hb_001675_310--Hb_000666_120 Hb_003435_040 Hb_003435_040 Hb_001675_310--Hb_003435_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.63274 20.9265 11.7933 44.3864 0.372287 0.724506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0434284 0.23912 0.696912 2.83572 10.6401

CAGE analysis