Hb_001999_240

Information

Type -
Description -
Location Contig1999: 219692-223633
Sequence    

Annotation

kegg
ID pop:POPTR_0001s25660g
description POPTRDRAFT_549087; hypothetical protein
nr
ID XP_011035189.1
description PREDICTED: josephin-like protein [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9GIU2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s25660g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20045: 222799-223361
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001999_240 0.0 - - PREDICTED: josephin-like protein [Populus euphratica]
2 Hb_002820_120 0.2086393622 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
3 Hb_005363_010 0.2089646758 - - hypothetical protein JCGZ_13835 [Jatropha curcas]
4 Hb_001221_520 0.2261879592 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003910_020 0.2431964449 - - PREDICTED: reticulon-like protein B13 [Jatropha curcas]
6 Hb_009557_050 0.2467030226 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
7 Hb_186647_010 0.2509676105 - - -
8 Hb_000003_760 0.254922972 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]
9 Hb_006925_070 0.2556392287 - - hypothetical protein JCGZ_20652 [Jatropha curcas]
10 Hb_001511_190 0.2559856161 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
11 Hb_006816_160 0.2604508837 - - hypothetical protein RCOM_1434920 [Ricinus communis]
12 Hb_173030_010 0.2607662009 - - hypothetical protein RCOM_1321060 [Ricinus communis]
13 Hb_003020_180 0.2633581925 - - PREDICTED: probable protein phosphatase 2C 24 [Jatropha curcas]
14 Hb_111881_030 0.2634878198 - - PREDICTED: uncharacterized protein LOC105645255 [Jatropha curcas]
15 Hb_009252_120 0.2660780367 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001956_190 0.267788563 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
17 Hb_001507_030 0.2714019563 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
18 Hb_008725_190 0.2764083689 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
19 Hb_020967_010 0.2799388548 - - -
20 Hb_000445_010 0.283239146 - - PREDICTED: uncharacterized protein LOC105113411 [Populus euphratica]

Gene co-expression network

sample Hb_001999_240 Hb_001999_240 Hb_002820_120 Hb_002820_120 Hb_001999_240--Hb_002820_120 Hb_005363_010 Hb_005363_010 Hb_001999_240--Hb_005363_010 Hb_001221_520 Hb_001221_520 Hb_001999_240--Hb_001221_520 Hb_003910_020 Hb_003910_020 Hb_001999_240--Hb_003910_020 Hb_009557_050 Hb_009557_050 Hb_001999_240--Hb_009557_050 Hb_186647_010 Hb_186647_010 Hb_001999_240--Hb_186647_010 Hb_009252_120 Hb_009252_120 Hb_002820_120--Hb_009252_120 Hb_006816_160 Hb_006816_160 Hb_002820_120--Hb_006816_160 Hb_035006_010 Hb_035006_010 Hb_002820_120--Hb_035006_010 Hb_001481_110 Hb_001481_110 Hb_002820_120--Hb_001481_110 Hb_005687_060 Hb_005687_060 Hb_002820_120--Hb_005687_060 Hb_001059_050 Hb_001059_050 Hb_002820_120--Hb_001059_050 Hb_005363_010--Hb_001221_520 Hb_118094_010 Hb_118094_010 Hb_005363_010--Hb_118094_010 Hb_001507_030 Hb_001507_030 Hb_005363_010--Hb_001507_030 Hb_003020_180 Hb_003020_180 Hb_005363_010--Hb_003020_180 Hb_004899_310 Hb_004899_310 Hb_005363_010--Hb_004899_310 Hb_001221_520--Hb_009557_050 Hb_004241_200 Hb_004241_200 Hb_001221_520--Hb_004241_200 Hb_008406_030 Hb_008406_030 Hb_001221_520--Hb_008406_030 Hb_001221_520--Hb_001507_030 Hb_005227_050 Hb_005227_050 Hb_001221_520--Hb_005227_050 Hb_003910_020--Hb_009252_120 Hb_148971_010 Hb_148971_010 Hb_003910_020--Hb_148971_010 Hb_000003_430 Hb_000003_430 Hb_003910_020--Hb_000003_430 Hb_003910_020--Hb_002820_120 Hb_011416_020 Hb_011416_020 Hb_003910_020--Hb_011416_020 Hb_001791_010 Hb_001791_010 Hb_003910_020--Hb_001791_010 Hb_009557_050--Hb_008406_030 Hb_009557_050--Hb_004241_200 Hb_000003_760 Hb_000003_760 Hb_009557_050--Hb_000003_760 Hb_001472_140 Hb_001472_140 Hb_009557_050--Hb_001472_140 Hb_002234_130 Hb_002234_130 Hb_009557_050--Hb_002234_130 Hb_019026_030 Hb_019026_030 Hb_009557_050--Hb_019026_030 Hb_155541_020 Hb_155541_020 Hb_186647_010--Hb_155541_020 Hb_105660_010 Hb_105660_010 Hb_186647_010--Hb_105660_010 Hb_001357_030 Hb_001357_030 Hb_186647_010--Hb_001357_030 Hb_049915_010 Hb_049915_010 Hb_186647_010--Hb_049915_010 Hb_000302_100 Hb_000302_100 Hb_186647_010--Hb_000302_100 Hb_011918_010 Hb_011918_010 Hb_186647_010--Hb_011918_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.20133 0.123252 1.14633 0 0.0744981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.359207 0.201794 0.0742365 0.113639 0

CAGE analysis