Hb_001999_250

Information

Type -
Description -
Location Contig1999: 224420-227218
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04790g
description POPTRDRAFT_821496; C2 domain-containing family protein
nr
ID XP_011035190.1
description PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A9PBN8
description C2 domain-containing family protein OS=Populus trichocarpa GN=POPTR_0009s04790g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20046: 225847-227094
cDNA
(Sanger)
(ID:Location)		 019_K04.ab1: 226337-227094 , 023_G12.ab1: 226424-227094 , 027_O02r.ab1: 227902-229407 , 040_P09.ab1: 226379-226667 , 046_N08.ab1: 226493-227094 , 047_E11.ab1: 226353-226666 , 050_F12.ab1: 226567-227094

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001999_250 0.0 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
2 Hb_001247_230 0.0903373877 - - nucleic acid binding protein, putative [Ricinus communis]
3 Hb_003349_010 0.1023466001 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10023911mg [Citrus clementina]
4 Hb_000265_250 0.1261764395 - - auxilin, putative [Ricinus communis]
5 Hb_001504_190 0.1323435806 - - double-stranded RNA binding protein, putative [Ricinus communis]
6 Hb_075449_020 0.1349076607 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
7 Hb_002849_080 0.1381756318 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
8 Hb_000390_220 0.1404788302 - - PREDICTED: uncharacterized protein LOC100244219 [Vitis vinifera]
9 Hb_003633_140 0.1412874534 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
10 Hb_002316_050 0.1437256369 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002609_010 0.1450732546 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
12 Hb_025306_010 0.1484760329 transcription factor TF Family: MYB-related syringolide-induced protein 1-3-1B [Populus trichocarpa]
13 Hb_003906_190 0.1503352541 - - hypothetical protein EUGRSUZ_K00213 [Eucalyptus grandis]
14 Hb_011465_030 0.1507252922 - - PREDICTED: B2 protein [Jatropha curcas]
15 Hb_007257_050 0.1527111922 - - protein with unknown function [Ricinus communis]
16 Hb_009028_030 0.1587693117 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
17 Hb_148209_020 0.1607138326 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
18 Hb_006501_060 0.1612298497 - - PREDICTED: lachrymatory-factor synthase-like [Jatropha curcas]
19 Hb_002477_150 0.166138439 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
20 Hb_026198_040 0.1661887233 - - PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]

Gene co-expression network

sample Hb_001999_250 Hb_001999_250 Hb_001247_230 Hb_001247_230 Hb_001999_250--Hb_001247_230 Hb_003349_010 Hb_003349_010 Hb_001999_250--Hb_003349_010 Hb_000265_250 Hb_000265_250 Hb_001999_250--Hb_000265_250 Hb_001504_190 Hb_001504_190 Hb_001999_250--Hb_001504_190 Hb_075449_020 Hb_075449_020 Hb_001999_250--Hb_075449_020 Hb_002849_080 Hb_002849_080 Hb_001999_250--Hb_002849_080 Hb_001247_230--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_001247_230--Hb_148209_020 Hb_001247_230--Hb_000265_250 Hb_002609_010 Hb_002609_010 Hb_001247_230--Hb_002609_010 Hb_000116_570 Hb_000116_570 Hb_001247_230--Hb_000116_570 Hb_003349_010--Hb_002849_080 Hb_009028_030 Hb_009028_030 Hb_003349_010--Hb_009028_030 Hb_010584_010 Hb_010584_010 Hb_003349_010--Hb_010584_010 Hb_003349_010--Hb_001247_230 Hb_007257_050 Hb_007257_050 Hb_003349_010--Hb_007257_050 Hb_011465_030 Hb_011465_030 Hb_000265_250--Hb_011465_030 Hb_002477_150 Hb_002477_150 Hb_000265_250--Hb_002477_150 Hb_000265_250--Hb_148209_020 Hb_000265_250--Hb_009028_030 Hb_000265_250--Hb_002849_080 Hb_144824_010 Hb_144824_010 Hb_001504_190--Hb_144824_010 Hb_001504_190--Hb_002477_150 Hb_000449_050 Hb_000449_050 Hb_001504_190--Hb_000449_050 Hb_000003_340 Hb_000003_340 Hb_001504_190--Hb_000003_340 Hb_001504_190--Hb_009028_030 Hb_001662_030 Hb_001662_030 Hb_075449_020--Hb_001662_030 Hb_000390_220 Hb_000390_220 Hb_075449_020--Hb_000390_220 Hb_025306_010 Hb_025306_010 Hb_075449_020--Hb_025306_010 Hb_000540_120 Hb_000540_120 Hb_075449_020--Hb_000540_120 Hb_075449_020--Hb_011465_030 Hb_002849_080--Hb_148209_020 Hb_006316_070 Hb_006316_070 Hb_002849_080--Hb_006316_070 Hb_002977_010 Hb_002977_010 Hb_002849_080--Hb_002977_010 Hb_002849_080--Hb_002609_010 Hb_002849_080--Hb_011465_030 Hb_005038_020 Hb_005038_020 Hb_002849_080--Hb_005038_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
111.613 224.361 27.8685 14.8134 135.134 88.8774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.6235 18.8016 16.9734 23.5131 7.81959

CAGE analysis