Hb_001999_290

Information

Type -
Description -
Location Contig1999: 236761-244321
Sequence    

Annotation

kegg
ID rcu:RCOM_0611470
description Cell division protein ftsH, putative (EC:3.6.4.3)
nr
ID XP_012067987.1
description PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9FIM2
description ATP-dependent zinc metalloprotease FTSH 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1
trembl
ID A0A067LGP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08500 PE=3 SV=1
Gene Ontology
ID GO:0016021
description atp-dependent zinc metalloprotease ftsh chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20051: 236827-244264
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001999_290 0.0 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
2 Hb_001157_240 0.0521859762 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
3 Hb_000174_270 0.0522350752 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
4 Hb_004079_060 0.0547215426 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
5 Hb_005736_020 0.0574977414 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
6 Hb_001004_060 0.0596280638 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
7 Hb_062226_070 0.0623533877 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
8 Hb_001304_110 0.0624414944 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
9 Hb_005582_040 0.0660585338 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
10 Hb_001635_120 0.0667273029 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
11 Hb_000640_040 0.0669250232 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
12 Hb_007441_160 0.0682818816 - - RNA binding protein, putative [Ricinus communis]
13 Hb_003494_020 0.0697384837 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
14 Hb_005686_090 0.0717051951 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
15 Hb_000028_130 0.0747701388 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
16 Hb_008959_010 0.0752192616 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000672_040 0.0752382103 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
18 Hb_002830_010 0.0752881874 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
19 Hb_002263_020 0.0754839315 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
20 Hb_000258_160 0.0760959643 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001999_290 Hb_001999_290 Hb_001157_240 Hb_001157_240 Hb_001999_290--Hb_001157_240 Hb_000174_270 Hb_000174_270 Hb_001999_290--Hb_000174_270 Hb_004079_060 Hb_004079_060 Hb_001999_290--Hb_004079_060 Hb_005736_020 Hb_005736_020 Hb_001999_290--Hb_005736_020 Hb_001004_060 Hb_001004_060 Hb_001999_290--Hb_001004_060 Hb_062226_070 Hb_062226_070 Hb_001999_290--Hb_062226_070 Hb_003943_110 Hb_003943_110 Hb_001157_240--Hb_003943_110 Hb_001157_240--Hb_005736_020 Hb_005582_040 Hb_005582_040 Hb_001157_240--Hb_005582_040 Hb_000640_040 Hb_000640_040 Hb_001157_240--Hb_000640_040 Hb_001008_120 Hb_001008_120 Hb_001157_240--Hb_001008_120 Hb_003494_020 Hb_003494_020 Hb_000174_270--Hb_003494_020 Hb_000028_130 Hb_000028_130 Hb_000174_270--Hb_000028_130 Hb_000174_270--Hb_062226_070 Hb_000037_190 Hb_000037_190 Hb_000174_270--Hb_000037_190 Hb_001635_120 Hb_001635_120 Hb_000174_270--Hb_001635_120 Hb_004079_060--Hb_062226_070 Hb_000473_110 Hb_000473_110 Hb_004079_060--Hb_000473_110 Hb_000258_160 Hb_000258_160 Hb_004079_060--Hb_000258_160 Hb_004079_060--Hb_000174_270 Hb_004079_060--Hb_003494_020 Hb_005686_090 Hb_005686_090 Hb_005736_020--Hb_005686_090 Hb_005736_020--Hb_001004_060 Hb_005736_020--Hb_001008_120 Hb_000204_120 Hb_000204_120 Hb_005736_020--Hb_000204_120 Hb_000329_710 Hb_000329_710 Hb_001004_060--Hb_000329_710 Hb_000792_010 Hb_000792_010 Hb_001004_060--Hb_000792_010 Hb_000327_270 Hb_000327_270 Hb_001004_060--Hb_000327_270 Hb_001205_230 Hb_001205_230 Hb_001004_060--Hb_001205_230 Hb_062226_070--Hb_003494_020 Hb_062226_070--Hb_000028_130 Hb_062226_070--Hb_005582_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9237 22.6314 13.9751 15.7568 17.0325 15.621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.916 13.8309 21.6676 16.9227 28.1091

CAGE analysis