Hb_001999_310

Information

Type -
Description -
Location Contig1999: 252050-266234
Sequence    

Annotation

kegg
ID rcu:RCOM_0611400
description hydrolase, hydrolyzing O-glycosyl compounds, putative (EC:3.2.1.21)
nr
ID XP_012068057.1
description PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
swissprot
ID A7LXU3
description Beta-glucosidase BoGH3B OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153) GN=BACOVA_02659 PE=1 SV=1
trembl
ID A0A067LDP5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08504 PE=3 SV=1
Gene Ontology
ID GO:0008422
description lysosomal beta glucosidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20054: 252084-266249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001999_310 0.0 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
2 Hb_001671_100 0.0489231623 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
3 Hb_027073_020 0.0531590189 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
4 Hb_000614_240 0.0537482387 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
5 Hb_001876_050 0.0544218262 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
6 Hb_001500_140 0.0563684527 - - pelota, putative [Ricinus communis]
7 Hb_029243_030 0.0577403987 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
8 Hb_003913_070 0.0584028973 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
9 Hb_000111_290 0.0593198873 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
10 Hb_007416_120 0.0604447668 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
11 Hb_013726_090 0.0617354133 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
12 Hb_001417_030 0.0639343176 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
13 Hb_000406_200 0.0649467596 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
14 Hb_000138_100 0.0654667701 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
15 Hb_004567_090 0.0661509686 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
16 Hb_010142_020 0.0665881337 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002456_010 0.067603002 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
18 Hb_000011_060 0.0683700646 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
19 Hb_001301_150 0.0684386037 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
20 Hb_007380_060 0.0685680004 - - hypothetical protein POPTR_0006s00280g [Populus trichocarpa]

Gene co-expression network

sample Hb_001999_310 Hb_001999_310 Hb_001671_100 Hb_001671_100 Hb_001999_310--Hb_001671_100 Hb_027073_020 Hb_027073_020 Hb_001999_310--Hb_027073_020 Hb_000614_240 Hb_000614_240 Hb_001999_310--Hb_000614_240 Hb_001876_050 Hb_001876_050 Hb_001999_310--Hb_001876_050 Hb_001500_140 Hb_001500_140 Hb_001999_310--Hb_001500_140 Hb_029243_030 Hb_029243_030 Hb_001999_310--Hb_029243_030 Hb_007416_120 Hb_007416_120 Hb_001671_100--Hb_007416_120 Hb_001671_100--Hb_001876_050 Hb_002232_360 Hb_002232_360 Hb_001671_100--Hb_002232_360 Hb_000392_430 Hb_000392_430 Hb_001671_100--Hb_000392_430 Hb_001314_050 Hb_001314_050 Hb_001671_100--Hb_001314_050 Hb_001789_110 Hb_001789_110 Hb_027073_020--Hb_001789_110 Hb_000789_200 Hb_000789_200 Hb_027073_020--Hb_000789_200 Hb_027073_020--Hb_029243_030 Hb_122968_010 Hb_122968_010 Hb_027073_020--Hb_122968_010 Hb_000406_200 Hb_000406_200 Hb_027073_020--Hb_000406_200 Hb_010142_020 Hb_010142_020 Hb_000614_240--Hb_010142_020 Hb_000111_290 Hb_000111_290 Hb_000614_240--Hb_000111_290 Hb_011016_050 Hb_011016_050 Hb_000614_240--Hb_011016_050 Hb_000011_060 Hb_000011_060 Hb_000614_240--Hb_000011_060 Hb_002456_010 Hb_002456_010 Hb_000614_240--Hb_002456_010 Hb_001876_050--Hb_007416_120 Hb_004324_130 Hb_004324_130 Hb_001876_050--Hb_004324_130 Hb_006831_140 Hb_006831_140 Hb_001876_050--Hb_006831_140 Hb_001876_050--Hb_002456_010 Hb_001584_120 Hb_001584_120 Hb_001500_140--Hb_001584_120 Hb_001500_140--Hb_010142_020 Hb_093458_040 Hb_093458_040 Hb_001500_140--Hb_093458_040 Hb_000140_290 Hb_000140_290 Hb_001500_140--Hb_000140_290 Hb_000574_450 Hb_000574_450 Hb_001500_140--Hb_000574_450 Hb_029243_030--Hb_000574_450 Hb_010515_020 Hb_010515_020 Hb_029243_030--Hb_010515_020 Hb_029243_030--Hb_001500_140 Hb_002989_020 Hb_002989_020 Hb_029243_030--Hb_002989_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.81902 5.49016 5.00448 6.89428 4.39268 6.22826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.1186 6.25189 5.79389 10.3059 7.52764

CAGE analysis