Hb_001999_320

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig1999: 268832-271614
Sequence    

Annotation

kegg
ID rcu:RCOM_0611390
description DNA binding protein, putative
nr
ID XP_012068071.1
description PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
swissprot
ID Q8S9H7
description Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1
trembl
ID A0A067LGQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08505 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor divaricata

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20055: 268736-271633 , PASA_asmbl_20056: 270130-270399
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001999_320 0.0 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
2 Hb_001059_060 0.0914522498 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
3 Hb_003849_160 0.0922602276 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
4 Hb_003912_080 0.0967628433 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
5 Hb_004052_110 0.1003904384 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
6 Hb_002259_220 0.1075310321 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
7 Hb_009078_020 0.1075326646 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
8 Hb_001001_090 0.1137634371 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
9 Hb_000853_330 0.115873728 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
10 Hb_011188_010 0.1165009775 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
11 Hb_005357_110 0.1165173461 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
12 Hb_008494_030 0.1218666022 - - catalytic, putative [Ricinus communis]
13 Hb_000196_010 0.1231793606 - - Patellin-5, putative [Ricinus communis]
14 Hb_000487_370 0.1232695859 - - -
15 Hb_002909_100 0.1243802966 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
16 Hb_001998_210 0.1262165756 - - unnamed protein product [Coffea canephora]
17 Hb_000422_080 0.1278151542 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
18 Hb_001663_130 0.128387314 - - acyl-CoA thioesterase, putative [Ricinus communis]
19 Hb_002675_080 0.1286917401 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]
20 Hb_000594_060 0.1288811509 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]

Gene co-expression network

sample Hb_001999_320 Hb_001999_320 Hb_001059_060 Hb_001059_060 Hb_001999_320--Hb_001059_060 Hb_003849_160 Hb_003849_160 Hb_001999_320--Hb_003849_160 Hb_003912_080 Hb_003912_080 Hb_001999_320--Hb_003912_080 Hb_004052_110 Hb_004052_110 Hb_001999_320--Hb_004052_110 Hb_002259_220 Hb_002259_220 Hb_001999_320--Hb_002259_220 Hb_009078_020 Hb_009078_020 Hb_001999_320--Hb_009078_020 Hb_001059_060--Hb_009078_020 Hb_000853_330 Hb_000853_330 Hb_001059_060--Hb_000853_330 Hb_001059_060--Hb_004052_110 Hb_011188_010 Hb_011188_010 Hb_001059_060--Hb_011188_010 Hb_001998_210 Hb_001998_210 Hb_001059_060--Hb_001998_210 Hb_001439_070 Hb_001439_070 Hb_001059_060--Hb_001439_070 Hb_029552_020 Hb_029552_020 Hb_003849_160--Hb_029552_020 Hb_000529_130 Hb_000529_130 Hb_003849_160--Hb_000529_130 Hb_002675_080 Hb_002675_080 Hb_003849_160--Hb_002675_080 Hb_003849_160--Hb_009078_020 Hb_000968_060 Hb_000968_060 Hb_003849_160--Hb_000968_060 Hb_002909_100 Hb_002909_100 Hb_003912_080--Hb_002909_100 Hb_000230_470 Hb_000230_470 Hb_003912_080--Hb_000230_470 Hb_004678_010 Hb_004678_010 Hb_003912_080--Hb_004678_010 Hb_001948_090 Hb_001948_090 Hb_003912_080--Hb_001948_090 Hb_002026_030 Hb_002026_030 Hb_003912_080--Hb_002026_030 Hb_004052_110--Hb_002259_220 Hb_004052_110--Hb_001998_210 Hb_001865_100 Hb_001865_100 Hb_004052_110--Hb_001865_100 Hb_000979_140 Hb_000979_140 Hb_004052_110--Hb_000979_140 Hb_004052_110--Hb_011188_010 Hb_001514_240 Hb_001514_240 Hb_002259_220--Hb_001514_240 Hb_002259_220--Hb_011188_010 Hb_002259_220--Hb_009078_020 Hb_002259_220--Hb_001059_060 Hb_000477_070 Hb_000477_070 Hb_002259_220--Hb_000477_070 Hb_009078_020--Hb_011188_010 Hb_009078_020--Hb_001998_210 Hb_002809_160 Hb_002809_160 Hb_009078_020--Hb_002809_160 Hb_001408_020 Hb_001408_020 Hb_009078_020--Hb_001408_020 Hb_009078_020--Hb_000853_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.74109 9.02059 12.653 11.7469 1.28254 3.34689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.07935 0.990716 0.571454 4.12712 11.4994

CAGE analysis