Hb_001999_330

Information

Type -
Description -
Location Contig1999: 278967-287965
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022262mg
description hypothetical protein
nr
ID XP_007199239.1
description hypothetical protein PRUPE_ppa022262mg, partial [Prunus persica]
swissprot
ID Q1PDH6
description Laccase-16 OS=Arabidopsis thaliana GN=LAC16 PE=2 SV=2
trembl
ID M5VU56
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022262mg PE=4 SV=1
Gene Ontology
ID GO:0048046
description laccase diphenol oxidase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20057: 279180-279773
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001999_330 0.0 - - hypothetical protein PRUPE_ppa022262mg, partial [Prunus persica]
2 Hb_000336_130 0.0779277257 - - Triacylglycerol lipase 2 precursor, putative [Ricinus communis]
3 Hb_007101_090 0.0784244573 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
4 Hb_002010_010 0.084086519 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
5 Hb_000645_270 0.0841375283 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
6 Hb_000844_060 0.0884094033 - - PREDICTED: uncharacterized protein LOC105633706 [Jatropha curcas]
7 Hb_009095_020 0.0950476825 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
8 Hb_026188_010 0.1022833358 - - PREDICTED: tropinone reductase homolog [Jatropha curcas]
9 Hb_003622_050 0.1041495828 - - PREDICTED: respiratory burst oxidase homolog protein A-like [Jatropha curcas]
10 Hb_001053_050 0.104722473 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
11 Hb_003947_020 0.1100030769 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
12 Hb_031194_020 0.1117159857 - - BnaCnng13030D [Brassica napus]
13 Hb_002600_110 0.1127065355 - - hypothetical protein POPTR_0004s10540g [Populus trichocarpa]
14 Hb_001856_290 0.1147651139 - - hypothetical protein JCGZ_16255 [Jatropha curcas]
15 Hb_048694_010 0.1162038466 - - catalytic, putative [Ricinus communis]
16 Hb_003253_030 0.119579518 - - lysosomal pro-X carboxypeptidase, putative [Ricinus communis]
17 Hb_001146_030 0.1207687546 - - cytochrome P450, putative [Ricinus communis]
18 Hb_063885_010 0.1219913325 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
19 Hb_001001_130 0.1227101195 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
20 Hb_052139_010 0.1234434037 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]

Gene co-expression network

sample Hb_001999_330 Hb_001999_330 Hb_000336_130 Hb_000336_130 Hb_001999_330--Hb_000336_130 Hb_007101_090 Hb_007101_090 Hb_001999_330--Hb_007101_090 Hb_002010_010 Hb_002010_010 Hb_001999_330--Hb_002010_010 Hb_000645_270 Hb_000645_270 Hb_001999_330--Hb_000645_270 Hb_000844_060 Hb_000844_060 Hb_001999_330--Hb_000844_060 Hb_009095_020 Hb_009095_020 Hb_001999_330--Hb_009095_020 Hb_000336_130--Hb_002010_010 Hb_026188_010 Hb_026188_010 Hb_000336_130--Hb_026188_010 Hb_171685_070 Hb_171685_070 Hb_000336_130--Hb_171685_070 Hb_063885_010 Hb_063885_010 Hb_000336_130--Hb_063885_010 Hb_000336_130--Hb_007101_090 Hb_001001_130 Hb_001001_130 Hb_007101_090--Hb_001001_130 Hb_052139_010 Hb_052139_010 Hb_007101_090--Hb_052139_010 Hb_007101_090--Hb_000645_270 Hb_001856_290 Hb_001856_290 Hb_007101_090--Hb_001856_290 Hb_007101_090--Hb_002010_010 Hb_161881_010 Hb_161881_010 Hb_002010_010--Hb_161881_010 Hb_003732_030 Hb_003732_030 Hb_002010_010--Hb_003732_030 Hb_004030_010 Hb_004030_010 Hb_002010_010--Hb_004030_010 Hb_031194_020 Hb_031194_020 Hb_000645_270--Hb_031194_020 Hb_003622_050 Hb_003622_050 Hb_000645_270--Hb_003622_050 Hb_003947_020 Hb_003947_020 Hb_000645_270--Hb_003947_020 Hb_000645_270--Hb_052139_010 Hb_000645_270--Hb_009095_020 Hb_003253_030 Hb_003253_030 Hb_000844_060--Hb_003253_030 Hb_000844_060--Hb_003622_050 Hb_000844_060--Hb_000645_270 Hb_000844_060--Hb_031194_020 Hb_002600_110 Hb_002600_110 Hb_000844_060--Hb_002600_110 Hb_006331_010 Hb_006331_010 Hb_009095_020--Hb_006331_010 Hb_048694_010 Hb_048694_010 Hb_009095_020--Hb_048694_010 Hb_001081_070 Hb_001081_070 Hb_009095_020--Hb_001081_070 Hb_083242_040 Hb_083242_040 Hb_009095_020--Hb_083242_040 Hb_009095_020--Hb_026188_010 Hb_001715_050 Hb_001715_050 Hb_009095_020--Hb_001715_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.428536 0.885227 2.21708 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.655909 23.3505

CAGE analysis