Hb_002002_030

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2002: 79509-84766
Sequence    

Annotation

kegg
ID rcu:RCOM_0885080
description Disease resistance protein RPS5, putative
nr
ID XP_002522629.1
description Disease resistance protein RPS5, putative [Ricinus communis]
swissprot
ID Q9T048
description Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1
trembl
ID B9S9G0
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0885080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20273: 80687-84210
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002002_030 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
2 Hb_155702_010 0.1047444612 - - Tetraspanin-5 [Gossypium arboreum]
3 Hb_005038_020 0.1123999789 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_004310_050 0.1158656993 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
5 Hb_002849_080 0.1193337964 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
6 Hb_002270_010 0.119341339 - - Chaperone protein dnaJ, putative [Ricinus communis]
7 Hb_010584_010 0.120499765 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
8 Hb_000172_550 0.1217178661 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
9 Hb_000735_120 0.1228883244 - - PREDICTED: pentatricopeptide repeat-containing protein At3g25210, mitochondrial [Jatropha curcas]
10 Hb_032202_240 0.1229806879 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
11 Hb_012395_160 0.1230329904 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
12 Hb_000116_280 0.1234477782 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
13 Hb_005399_020 0.1250074998 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
14 Hb_000886_060 0.1274938307 - - PREDICTED: serine/threonine-protein kinase SAPK10 isoform X2 [Vitis vinifera]
15 Hb_001976_090 0.1277027497 - - PREDICTED: uncharacterized protein LOC105641696 [Jatropha curcas]
16 Hb_006316_070 0.1287207201 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
17 Hb_000076_290 0.1300030044 - - translation factor sui1, putative [Ricinus communis]
18 Hb_006816_300 0.1307764965 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
19 Hb_000174_200 0.1337367727 - - PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
20 Hb_002078_420 0.1343501665 - - PREDICTED: F-box only protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_002002_030 Hb_002002_030 Hb_155702_010 Hb_155702_010 Hb_002002_030--Hb_155702_010 Hb_005038_020 Hb_005038_020 Hb_002002_030--Hb_005038_020 Hb_004310_050 Hb_004310_050 Hb_002002_030--Hb_004310_050 Hb_002849_080 Hb_002849_080 Hb_002002_030--Hb_002849_080 Hb_002270_010 Hb_002270_010 Hb_002002_030--Hb_002270_010 Hb_010584_010 Hb_010584_010 Hb_002002_030--Hb_010584_010 Hb_011465_030 Hb_011465_030 Hb_155702_010--Hb_011465_030 Hb_017075_030 Hb_017075_030 Hb_155702_010--Hb_017075_030 Hb_001769_010 Hb_001769_010 Hb_155702_010--Hb_001769_010 Hb_032202_240 Hb_032202_240 Hb_155702_010--Hb_032202_240 Hb_003106_150 Hb_003106_150 Hb_155702_010--Hb_003106_150 Hb_005399_020 Hb_005399_020 Hb_005038_020--Hb_005399_020 Hb_012395_160 Hb_012395_160 Hb_005038_020--Hb_012395_160 Hb_005038_020--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_005038_020--Hb_148209_020 Hb_002078_420 Hb_002078_420 Hb_005038_020--Hb_002078_420 Hb_000174_200 Hb_000174_200 Hb_005038_020--Hb_000174_200 Hb_010080_060 Hb_010080_060 Hb_004310_050--Hb_010080_060 Hb_000046_450 Hb_000046_450 Hb_004310_050--Hb_000046_450 Hb_000699_250 Hb_000699_250 Hb_004310_050--Hb_000699_250 Hb_000865_080 Hb_000865_080 Hb_004310_050--Hb_000865_080 Hb_008714_020 Hb_008714_020 Hb_004310_050--Hb_008714_020 Hb_006816_300 Hb_006816_300 Hb_004310_050--Hb_006816_300 Hb_002849_080--Hb_148209_020 Hb_006316_070 Hb_006316_070 Hb_002849_080--Hb_006316_070 Hb_002977_010 Hb_002977_010 Hb_002849_080--Hb_002977_010 Hb_002609_010 Hb_002609_010 Hb_002849_080--Hb_002609_010 Hb_002849_080--Hb_011465_030 Hb_005144_040 Hb_005144_040 Hb_002270_010--Hb_005144_040 Hb_000076_290 Hb_000076_290 Hb_002270_010--Hb_000076_290 Hb_000172_550 Hb_000172_550 Hb_002270_010--Hb_000172_550 Hb_000735_120 Hb_000735_120 Hb_002270_010--Hb_000735_120 Hb_001439_180 Hb_001439_180 Hb_002270_010--Hb_001439_180 Hb_015401_020 Hb_015401_020 Hb_002270_010--Hb_015401_020 Hb_057451_010 Hb_057451_010 Hb_010584_010--Hb_057451_010 Hb_009028_030 Hb_009028_030 Hb_010584_010--Hb_009028_030 Hb_003710_040 Hb_003710_040 Hb_010584_010--Hb_003710_040 Hb_007257_050 Hb_007257_050 Hb_010584_010--Hb_007257_050 Hb_010584_010--Hb_002609_010 Hb_000640_200 Hb_000640_200 Hb_010584_010--Hb_000640_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7798 11.4388 0.700732 4.71447 11.6161 12.695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.86497 2.03745 4.16241 3.84524 0.993642

CAGE analysis