Hb_002003_040

Information

Type -
Description -
Location Contig2003: 109366-111362
Sequence    

Annotation

kegg
ID tcc:TCM_002598
description Probably inactive leucine-rich repeat receptor-like protein kinase
nr
ID XP_012084469.1
description PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
swissprot
ID Q9ASS4
description Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1
trembl
ID A0A067LDD6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15068 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probably inactive leucine-rich repeat receptor-like protein kinase at5g48380

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20289: 110526-111910
cDNA
(Sanger)
(ID:Location)		 015_F07.ab1: 109214-109766

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002003_040 0.0 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
2 Hb_002420_010 0.0963545033 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
3 Hb_002671_060 0.106714174 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
4 Hb_000261_320 0.1127846901 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
5 Hb_002833_020 0.1147455892 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
6 Hb_082683_010 0.1214028668 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
7 Hb_001008_110 0.1265563487 - - -
8 Hb_000215_250 0.1316411238 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
9 Hb_042202_020 0.1316738196 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
10 Hb_000793_040 0.1318679006 - - PREDICTED: transcription factor LHW [Jatropha curcas]
11 Hb_001391_100 0.1318981742 - - AMP dependent ligase, putative [Ricinus communis]
12 Hb_001268_300 0.1370539297 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003226_030 0.1396109333 - - sucrose synthase 5 [Hevea brasiliensis]
14 Hb_005288_210 0.1410917393 - - hypothetical protein VITISV_017217 [Vitis vinifera]
15 Hb_007943_020 0.1464903292 - - transcription factor, putative [Ricinus communis]
16 Hb_005880_010 0.1470307345 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
17 Hb_062229_010 0.1471564155 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
18 Hb_000264_340 0.1482980163 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
19 Hb_025432_010 0.1505265614 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
20 Hb_000417_280 0.1517075606 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002003_040 Hb_002003_040 Hb_002420_010 Hb_002420_010 Hb_002003_040--Hb_002420_010 Hb_002671_060 Hb_002671_060 Hb_002003_040--Hb_002671_060 Hb_000261_320 Hb_000261_320 Hb_002003_040--Hb_000261_320 Hb_002833_020 Hb_002833_020 Hb_002003_040--Hb_002833_020 Hb_082683_010 Hb_082683_010 Hb_002003_040--Hb_082683_010 Hb_001008_110 Hb_001008_110 Hb_002003_040--Hb_001008_110 Hb_002420_010--Hb_082683_010 Hb_000215_250 Hb_000215_250 Hb_002420_010--Hb_000215_250 Hb_007943_020 Hb_007943_020 Hb_002420_010--Hb_007943_020 Hb_000264_340 Hb_000264_340 Hb_002420_010--Hb_000264_340 Hb_000793_040 Hb_000793_040 Hb_002420_010--Hb_000793_040 Hb_006934_020 Hb_006934_020 Hb_002671_060--Hb_006934_020 Hb_073808_010 Hb_073808_010 Hb_002671_060--Hb_073808_010 Hb_003226_030 Hb_003226_030 Hb_002671_060--Hb_003226_030 Hb_042202_020 Hb_042202_020 Hb_002671_060--Hb_042202_020 Hb_000085_380 Hb_000085_380 Hb_002671_060--Hb_000085_380 Hb_000261_320--Hb_002833_020 Hb_005880_010 Hb_005880_010 Hb_000261_320--Hb_005880_010 Hb_001391_100 Hb_001391_100 Hb_000261_320--Hb_001391_100 Hb_073973_020 Hb_073973_020 Hb_000261_320--Hb_073973_020 Hb_001268_300 Hb_001268_300 Hb_000261_320--Hb_001268_300 Hb_002833_020--Hb_001008_110 Hb_000417_280 Hb_000417_280 Hb_002833_020--Hb_000417_280 Hb_000100_210 Hb_000100_210 Hb_002833_020--Hb_000100_210 Hb_002833_020--Hb_000085_380 Hb_000120_310 Hb_000120_310 Hb_002833_020--Hb_000120_310 Hb_002833_020--Hb_042202_020 Hb_082683_010--Hb_001268_300 Hb_000816_020 Hb_000816_020 Hb_082683_010--Hb_000816_020 Hb_000527_140 Hb_000527_140 Hb_082683_010--Hb_000527_140 Hb_001677_230 Hb_001677_230 Hb_082683_010--Hb_001677_230 Hb_001008_110--Hb_000417_280 Hb_064985_010 Hb_064985_010 Hb_001008_110--Hb_064985_010 Hb_003142_060 Hb_003142_060 Hb_001008_110--Hb_003142_060 Hb_032717_010 Hb_032717_010 Hb_001008_110--Hb_032717_010 Hb_001008_110--Hb_042202_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.90089 18.6299 5.90371 14.0955 0.293054 1.86859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.40643 0.112865 0.56992 20.8979 15.1225

CAGE analysis