Hb_002003_110

Information

Type -
Description -
Location Contig2003: 170451-170810
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa019763mg
description hypothetical protein
nr
ID XP_012072654.1
description PREDICTED: uncharacterized protein LOC105634406 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LCZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10072 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002003_110 0.0 - - PREDICTED: uncharacterized protein LOC105634406 [Jatropha curcas]
2 Hb_089341_010 0.223065503 - - Uncharacterized protein TCM_018339 [Theobroma cacao]
3 Hb_027337_070 0.2371640946 - - hypothetical protein POPTR_0001s29030g [Populus trichocarpa]
4 Hb_000407_060 0.2550215311 - - -
5 Hb_004361_030 0.2626726236 - - PREDICTED: uncharacterized protein LOC104239397 isoform X1 [Nicotiana sylvestris]
6 Hb_172632_020 0.3066149688 - - -
7 Hb_005269_030 0.3090448691 - - cysteine protease, putative [Ricinus communis]
8 Hb_097433_020 0.3107216628 - - ATP-binding cassette transporter, putative [Ricinus communis]
9 Hb_003185_060 0.3111323484 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Amborella trichopoda]
10 Hb_010447_020 0.311928676 - - PREDICTED: uncharacterized protein LOC105797464 [Gossypium raimondii]
11 Hb_004650_090 0.3138226842 - - -
12 Hb_002367_120 0.3138895893 - - -
13 Hb_088176_010 0.3163650963 - - -
14 Hb_002986_120 0.3175830563 - - -
15 Hb_002426_010 0.3247214184 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
16 Hb_004483_020 0.3248861469 - - -
17 Hb_010997_100 0.3293976473 transcription factor TF Family: mTERF -
18 Hb_000032_530 0.3313324767 - - -
19 Hb_057217_010 0.3332157384 - - PREDICTED: uncharacterized protein LOC104594412 [Nelumbo nucifera]
20 Hb_002194_070 0.3357045211 - - -

Gene co-expression network

sample Hb_002003_110 Hb_002003_110 Hb_089341_010 Hb_089341_010 Hb_002003_110--Hb_089341_010 Hb_027337_070 Hb_027337_070 Hb_002003_110--Hb_027337_070 Hb_000407_060 Hb_000407_060 Hb_002003_110--Hb_000407_060 Hb_004361_030 Hb_004361_030 Hb_002003_110--Hb_004361_030 Hb_172632_020 Hb_172632_020 Hb_002003_110--Hb_172632_020 Hb_005269_030 Hb_005269_030 Hb_002003_110--Hb_005269_030 Hb_002426_010 Hb_002426_010 Hb_089341_010--Hb_002426_010 Hb_004483_020 Hb_004483_020 Hb_089341_010--Hb_004483_020 Hb_001303_070 Hb_001303_070 Hb_089341_010--Hb_001303_070 Hb_137515_010 Hb_137515_010 Hb_089341_010--Hb_137515_010 Hb_061365_010 Hb_061365_010 Hb_089341_010--Hb_061365_010 Hb_027337_070--Hb_004361_030 Hb_027337_070--Hb_000407_060 Hb_003185_060 Hb_003185_060 Hb_027337_070--Hb_003185_060 Hb_000580_040 Hb_000580_040 Hb_027337_070--Hb_000580_040 Hb_045527_010 Hb_045527_010 Hb_027337_070--Hb_045527_010 Hb_002367_120 Hb_002367_120 Hb_000407_060--Hb_002367_120 Hb_000407_060--Hb_172632_020 Hb_000407_060--Hb_004361_030 Hb_000248_120 Hb_000248_120 Hb_000407_060--Hb_000248_120 Hb_057217_010 Hb_057217_010 Hb_000407_060--Hb_057217_010 Hb_004361_030--Hb_003185_060 Hb_004361_030--Hb_172632_020 Hb_006216_010 Hb_006216_010 Hb_004361_030--Hb_006216_010 Hb_004361_030--Hb_057217_010 Hb_150998_010 Hb_150998_010 Hb_004361_030--Hb_150998_010 Hb_172632_020--Hb_002367_120 Hb_172632_020--Hb_057217_010 Hb_001218_080 Hb_001218_080 Hb_172632_020--Hb_001218_080 Hb_172632_020--Hb_150998_010 Hb_001414_130 Hb_001414_130 Hb_005269_030--Hb_001414_130 Hb_015909_010 Hb_015909_010 Hb_005269_030--Hb_015909_010 Hb_011030_030 Hb_011030_030 Hb_005269_030--Hb_011030_030 Hb_003311_050 Hb_003311_050 Hb_005269_030--Hb_003311_050 Hb_094101_010 Hb_094101_010 Hb_005269_030--Hb_094101_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.336239 0.0825069 0 0.0976794 0.397313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.085029 0

CAGE analysis